CX671758

Overview
NameCX671758
Unique NameCX671758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:107..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = -3
Query:  205 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKF 591
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI   AG L+   L+VIL++ LTIYG+A+F  G+  T        +    + LQT   W +F
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF--GQEKT--------QSSNENDLQTKKAWDQF 123          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = -3
Query:  124 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYF 597
            + ++P N DPF+G+L TP+T+S     YL NLP YR  ++PLLRG+E+G+AHG+ L+GPF   GPLRN+  A   G  +A  L++IL++ LTIYG+ASF +                  + L+++ GW  FT       + G   AY +L   N+ +F
Sbjct:    3 EFVKPFNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLTPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQDNGVG--------------ENLESSKGWRNFTSGFTIGALGGASVAYLVLN--NISFF 144          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.884e-27
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = -3
Query:  148 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 597
            + ++P N DPF+G+L TP+T+S     YL NLP YR  +SPLLRG+E+G+AHG+ L+GPF   GPLRN+  A   G  +A  L++IL++ LTIYG+ASF   E                + L++A GW  FT         G   AY LL
Sbjct:    3 EFVKPYNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLSPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTEGG--------------ENLESAKGWRNFTSGFSIGAFGGASVAYVLL 138          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = -3
Query:  151 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFL 627
            K + S+    +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+ A  AG LAA  LVV+L+  L++Y     +   P   P +T+       D   + + W  F       GI G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTVP--NPPVDAFNSKESWNNFASSFLIGGIGGAVVAYFL 161          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 63/150 (42.00%), Postives = 90/150 (60.00%), Query Frame = -3
Query:  148 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 597
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E A   G + A  +V++ + CL  YG+ SF              G+    D L++A+GW++F       G+ G   AYFLL
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQ-------------GKAASNDPLKSAEGWSQFAAGFFIGGMGGAFVAYFLL 144          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.221e-26
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  205 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKF 591
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I   AG L+   L++IL++ LTIYG A+F +              K    +LQT   W +F
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSWDQF 120          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.221e-26
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = -3
Query:   91 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFVK*KYVTSTLW 576
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE AG AG LA   LVVIL++CL++YG A      PS A     T     P +L T +GW++FT      G+ G   A+F  Y+ + PY      + + +W
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYGNAG---SGPSAAESTVTT--PNPPQELFTKEGWSEFTSGFILGGLGG---AFFAFYLASTPYVQPLVKIAAGVW 162          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 67/146 (45.89%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  139 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVL 576
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE A   G L+A  ++ IL+I L++Y  AS   G+P      TLT     P+ L T+ GW +F       G  GVI+AY L   L
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKPIE----TLT-TPDVPEDLGTSVGWGEFANGFFIGGSGGVIFAYLLCQAL 146          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = -3
Query:  121 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNLPYFV 576
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN + AG AG L    L+ +L++ L++YG    S       P  TLT     P+ L T +GW++F       G  G + AY L   L + Y +
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYGSVGVS------TPTATLT-TPNPPENLGTKEGWSEFAAGFLIGGCGGALVAYGLCIALPMMYTI 152          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = -3
Query:  133 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 591
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+ A  AG L+    V IL+    +Y   +    +P+  P       +  P  L T  GW  FT      G  G ++A+ L   L+L
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLY---TAPGKDPNVQPSDCTV--ENPPTDLFTRTGWTDFTSGFWLGGCGGAVFAWLLCGTLHL 185          
The following BLAST results are available for this feature:
BLAST of CX671758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PHATR1.884e-2750.39Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_ISOGA1.884e-2739.24Photosystem I reaction center subunit XI OS=Isochr... [more]
PSAL_EMIHU1.884e-2742.67Photosystem I reaction center subunit XI OS=Emilia... [more]
PSAL_NOSP75.481e-2740.88Photosystem I reaction center subunit XI OS=Nostoc... [more]
PSAL_MICAN5.481e-2742.00Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_THAPS1.221e-2648.06Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_SYNP61.221e-2642.59Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA57.408e-2445.89Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP22.155e-2339.47Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PROM41.001e-2037.91Photosystem I reaction center subunit XI OS=Prochl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13A04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A04-A7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671758 ID=CX671758; Name=CX671758; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTAACTGAAGCAAGTTTCATTTGCAATAAACATCCCAAACAGGTAG
ATTTACAGAGTAGCAAATTGAGATATATGGGATCTTAAAACCAAAGAGTA
GATGTTACATATTTCTATTTAACGAAGTAGGGAAGGTTAAGAACGTAAAG
CAGGAAATAAGCCCAAATGACACCAGAAATTCCACCAAAGAAGAATCCTC
AAGTGAACTTAGCCCACCCATCAGCTGTTTGCAACTGATCAGGCTCCTTC
TTCCTTCCGGTCAATGTTAAGCCTGGAGCAGTGGATGGCTCTCCTTCACT
GAATGAAGCAATTCCATAGATTGTCAAGCAAATGCTGAGGATCACAACAA
GGTCACCAGCTGCCAATGACCCTGCTGGTCCTGCTATTTCTGTGTTTCTC
AATGGCCCTGCCTTAACAAATGGACCCACAAGGAGGAATCCATGGGCCAA
CCCCACCTCTACTCCTCTCAGTAGTGGGCTGACTGCCGTCCGATAAGCTG
GTAGATTTGAGAGGTACCATGCAATCAATGGACTTGATGTAATTGGAGTC
TCCAAGCTTCCAATGAATGGATCACCATTGATTGGCTGAATAACTTGGTA
AGTTGGCTTTTCAGATTGGATAGCTTTGACAAGGAAACGAGGGCTTCTCT
TGGAGGGAACAACCCTGAATGGAGATCCAGAGATACCCCTTGGAGTAAGC
AGGCTCCTGGAAACTGGTGAAGTAAAGCTACTCTTGAGCTGGCTGG
back to top