CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIN (RNA polymerase sigma factor rpoD OS=Leptospira interrogans GN=rpoD PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.084e-16 Identity = 46/141 (32.62%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 377 KTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKV----DKILCKERE---SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K N ++ +E+ + +K G ++E R+ + +E +++ + G ++ +KI+ ERE +++ ++++ LVVSIA Y +G+ DLIQEG+IGL++ +F ++GYK STY WWI+QAI R I Sbjct: 276 KAFNRFIEKNEKLDDI-EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAI 415
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIC (RNA polymerase sigma factor rpoD OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.084e-16 Identity = 46/141 (32.62%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 377 KTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKV----DKILCKERE---SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K N ++ +E+ + +K G ++E R+ + +E +++ + G ++ +KI+ ERE +++ ++++ LVVSIA Y +G+ DLIQEG+IGL++ +F ++GYK STY WWI+QAI R I Sbjct: 276 KAFNRFIEKNEKLDDI-EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAI 415
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSC_SYNY3 (Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.038e-15 Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 2 Query: 464 KTVAQAEEH-ESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +TVA ++ +S K+ A+ G+ +++ I + ++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWWI+Q I R I Sbjct: 128 QTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQGITRAI 233
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_COXBU (RNA polymerase sigma factor rpoD OS=Coxiella burnetii GN=rpoD PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.038e-15 Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = 2 Query: 434 KEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K ++ A++ +AQ EE +++ Q K + + + K R +++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 415 KYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAIGE---AKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 526
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CHLTR (RNA polymerase sigma factor rpoD OS=Chlamydia trachomatis GN=rpoD PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.355e-15 Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 2 Query: 338 KENGELDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVD-----KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 + N D+ V K + +L ++ + E K A+ A+ + H+ +++A +++ K D + + K +E+++ ++ S LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK STY WWI+QA+ R I Sbjct: 237 RHNVTEDFGEVVFKAYDSFLQLEQQINDLKARAERNKFAAAKLAAARRKLHK---REVAAGRTLEEFKKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAI 385
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BUCAP (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpoD PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.150e-15 Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 2 Query: 446 KLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKIL-------CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 KLEE ++ V + + KQ+ K TG+ +V I K + +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 333 KLEEIKEKVFSSMKK---LKQIEKETGLTIEQVKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 447
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD4_SYNE7 (RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.150e-15 Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2 Query: 479 AEEHESISKQ-------LAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 AEE +S++ L S+ +L + ++ +++++ LVVS+A YQ +GL L DLIQEGS+GL R ++F+P GYK STY YWWI+Q++ R I Sbjct: 36 AEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAI 142
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CHLMU (RNA polymerase sigma factor rpoD OS=Chlamydia muridarum GN=rpoD PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.726e-15 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 2 Query: 443 AKLEEARKTVAQAEEHESIS-KQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 AKL AR+ + + E + ++ K M Q +DK +E+++ ++ S LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK STY WWI+QA+ R I Sbjct: 277 AKLAAARRKLYKREVAAGRTLEEFKKDVRMLQRWMDK----SQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAI 385
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_RHOCA (RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus GN=rpoD PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.785e-15 Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 2 Query: 326 DFLDKENG-ELD---YNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +F+D+ G ELD + + K + ++T E K K+E+ R +AQ ++ + + + K +K + R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 361 EFIDEYRGYELDPTWMDRMSAKPARAWVTLFE--------KSRDKVEDLRHEMAQVGQYVGVDISEFRRIVNQVQKGEK---EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 504
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDA_STRCO (RNA polymerase principal sigma factor hrdA OS=Streptomyces coelicolor GN=hrdA PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.147e-14 Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 2 Query: 542 VDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +D+++ R ++ R+I + LVVS+A Y G+GL++ DL+QEG++GL+R ++F+ RGYK STY WWI+QA+ R + Sbjct: 149 LDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRAL 227 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |