CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_ANASP (RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19 Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = 2 Query: 395 LTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 L EE E+ + + +LE R+ +++ E + + A+A + L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI R I Sbjct: 95 LRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAI 222
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD1_SYNE7 (RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.310e-18 Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 2 Query: 395 LTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 L EE E+ + + LE R + + + + A A + + L + R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI R I Sbjct: 104 LRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAI 231
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD3_SYNE7 (RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.109e-17 Identity = 47/129 (36.43%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 395 LTPSEEAEICYSLKEGAKLEEARKTVAQAE-EHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 LT EE + +++ KL+E R+T+ E + + + A A G+ ++ + +++ ++I + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+ STY YWWI+QAI R I Sbjct: 25 LTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAI 153
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD2_SYNE7 (RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17 Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 2 Query: 410 EAEICYS--LKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E E+C+ ++ L +A+ + HE ++ A A + +D+ + + + ++ ++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P +GYK STY YWWI+QAI R I Sbjct: 29 EEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAI 153
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_SYNY3 (RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.470e-17 Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 434 KEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K+ K ++ +A + S+ + ++ + + L +R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI R I Sbjct: 143 KKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAI 257
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_MICAE (RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17 Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 2 Query: 566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI R I Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAI 248
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSC_ANASP (RNA polymerase sigma-C factor OS=Anabaena sp. (strain PCC 7120) GN=sigC PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 9.385e-17 Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = 2 Query: 503 KQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++ A+ M +++K+ + +S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YWWI+Q I R I Sbjct: 154 RRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAI 245
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSB_ANASP (RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16 Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 2 Query: 404 SEEAEICYS--LKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 S E EI ++ +++ + A++ +A+ + E ++ A +K+ + + L + + +++++I++ LVVSIA YQ + L DLIQEG++GL RG ++F+P GYK STY YWWI+Q I R I Sbjct: 39 SHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAI 165
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_THEMA (RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +++++E++I S LVVSIA Y G+GLS +DLIQEG+IGLL+ ++F+ +GYK STY WWI+QAI R I Sbjct: 152 DKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAI 223
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRAU (RNA polymerase sigma factor rpoD OS=Streptomyces aureofaciens GN=rpoD PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16 Identity = 44/128 (34.38%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 395 LTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 LT +EE ++ ++ G EE A + ++ +D+++ R ++ R+I S LVVS+A Y G+GL++ DL+QEG++GL+R ++F+ RGYK STY WWI+QA+ R + Sbjct: 34 LTAAEEVDLARRVEAGLFAEEKLGGAADLDSQLAVD-------------LDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRAL 148 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |