CX671680

Overview
NameCX671680
Unique NameCX671680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BUCAI (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpoD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 2 
Query:  416 EICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            ++  S+K+  K+EE  +T    E+ + I+K+++               K R +++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  335 DVFISVKKLIKIEE--ETGLTIEQVKDINKRMSIGEA-----------KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 442
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_AGRT5 (RNA polymerase sigma factor rpoD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  329 FLDKENG-ELDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESIS-KQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            FL++ +G ELD N +K  T NL     +E    ++ +E   + E R+ +        IS  +  +   M Q    +    ++E  E  +R    LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  372 FLEQYHGAELDPNWMKSIT-NLAARGWKE----FAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLR----LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 514
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_SALTY (RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:  446 KLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +++   + + Q EE   ++ +  K    + S  +    K R +++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  338 EVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGE---AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_SALTI (RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:  446 KLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +++   + + Q EE   ++ +  K    + S  +    K R +++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  338 EVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGE---AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BORBU (RNA polymerase sigma factor rpoD OS=Borrelia burgdorferi GN=rpoD PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 2 
Query:  410 EAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE----------SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E E    LKE A  E       Q  E +   K+L +     +   DKI+    E          +++++I++   LVVSIA  Y  +GL   DL+QEG+IGL++  ++F  +RG+K STY  WWI+QAI R+I
Sbjct:  334 EIEKSLKLKEDAIKE-------QITEAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSI 459
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSB_CORDI (RNA polymerase sigma factor sigB OS=Corynebacterium diphtheriae GN=sigB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 2 
Query:  548 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIR 772
            K+L KE R+++  ++ +   LVVS+A  Y G+G+ L DLIQEG++GL+R  ++F+  +G+K STY  WWI+QAI R
Sbjct:   83 KVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITR 158
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOS_VIBCH (RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +  +++R+I S   LVV I+  Y  +GL+L DLI+EG++GL+R  ++F+PERG++ STY  WWI+Q I R +
Sbjct:   88 DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL 159
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XANCP (RNA polymerase sigma factor rpoD OS=Xanthomonas campestris pv. campestris GN=rpoD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            K R++++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  381 KARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 453
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XANAC (RNA polymerase sigma factor rpoD OS=Xanthomonas axonopodis pv. citri GN=rpoD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            K R++++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  382 KARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 454
[Close]
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_PSEFL (RNA polymerase sigma factor rpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2 
Query:  521 TGMKQSKVDKIL-------CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            TG+K +++  I         K R +++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  353 TGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445
The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RPOD_BUCAI3.338e-1436.36RNA polymerase sigma factor rpoD OS=Buchnera aphid... [more]
RPOD_AGRT53.338e-1436.18RNA polymerase sigma factor rpoD OS=Agrobacterium ... [more]
RPOD_SALTY4.360e-1436.04RNA polymerase sigma factor rpoD OS=Salmonella typ... [more]
RPOD_SALTI4.360e-1436.04RNA polymerase sigma factor rpoD OS=Salmonella typ... [more]
RPOD_BORBU4.360e-1436.09RNA polymerase sigma factor rpoD OS=Borrelia burgd... [more]
RPSB_CORDI7.437e-1447.37RNA polymerase sigma factor sigB OS=Corynebacteriu... [more]
RPOS_VIBCH9.712e-1445.83RNA polymerase sigma factor rpoS OS=Vibrio cholera... [more]
RPOD_XANCP9.712e-1447.95RNA polymerase sigma factor rpoD OS=Xanthomonas ca... [more]
RPOD_XANAC9.712e-1447.95RNA polymerase sigma factor rpoD OS=Xanthomonas ax... [more]
RPOD_PSEFL9.712e-1441.94RNA polymerase sigma factor rpoD OS=Pseudomonas fl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E04-J8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bp
CTTCATCTCCAACTCACTCAACACTCCCTTCTCTCAAAACCCTTCACCCT
CTCCCCCCTCCATCACTCTCCTCTTCTCCATCTTCTTGCCTAACAAATAC
AATATAAATATTAACTTAGTCACCAATGAAGCACTTGCACTACACCCTGT
CATTGAATCAGCAACTGATGCCGCGGCATTGGCAAGCGCGGCAGTGCGTA
CTGCCAAAGATGCTGTGTCATTTGCTAATGGGGCTGAAGAGGTTTGCTTT
GATGATGGAGAATGTGAGAGTGTGTTGAAAATGATGAGGAGGAGAAGCAG
GAGAAAGAAAAGGACGAAAGAGAGTGATTTTTTGGATAAAGAAAATGGGG
AACTTGATTATAATTTGGTGAAGTGTAAGACGTCTAATTTGTATTTGACC
CCTAGTGAGGAGGCTGAAATTTGTTACTCTCTCAAGGAGGGAGCAAAGCT
GGAAGAAGCTAGAAAAACAGTTGCACAAGCTGAAGAACATGAATCAATCT
CAAAGCAGTTGGCTAAGGCCACAGGGATGAAACAAAGCAAAGTGGATAAG
ATTCTGTGTAAAGAAAGAGAATCGCAAGAGAGGATCATTCGAAGCTATCG
CAGCCTTGTTGTCTCTATAGCCACTGGTTATCAAGGCAAAGGATTAAGCC
TCAAAGATCTCATTCAGGAAGGGAGCATAGGGCTTCTTCGAGGGGCAAAA
AGATTCAATCCAGAGAGAGGATATAAGTTGTCAACTTATGTTTACTGGTG
GATTAAACAAGCTATTATTAGAACCATA
back to top