CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BUCAI (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpoD PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14 Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 2 Query: 416 EICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++ S+K+ K+EE +T E+ + I+K+++ K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 335 DVFISVKKLIKIEE--ETGLTIEQVKDINKRMSIGEA-----------KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 442
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_AGRT5 (RNA polymerase sigma factor rpoD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 Query: 329 FLDKENG-ELDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESIS-KQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 FL++ +G ELD N +K T NL +E ++ +E + E R+ + IS + + M Q + ++E E +R LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 372 FLEQYHGAELDPNWMKSIT-NLAARGWKE----FAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLR----LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 514
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_SALTY (RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14 Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2 Query: 446 KLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +++ + + Q EE ++ + K + S + K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 338 EVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGE---AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_SALTI (RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14 Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2 Query: 446 KLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +++ + + Q EE ++ + K + S + K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 338 EVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGE---AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BORBU (RNA polymerase sigma factor rpoD OS=Borrelia burgdorferi GN=rpoD PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 2 Query: 410 EAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE----------SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E E LKE A E Q E + K+L + + DKI+ E +++++I++ LVVSIA Y +GL DL+QEG+IGL++ ++F +RG+K STY WWI+QAI R+I Sbjct: 334 EIEKSLKLKEDAIKE-------QITEAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSI 459
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSB_CORDI (RNA polymerase sigma factor sigB OS=Corynebacterium diphtheriae GN=sigB PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14 Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 2 Query: 548 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIR 772 K+L KE R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R Sbjct: 83 KVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITR 158
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOS_VIBCH (RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 2 Query: 563 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 + +++R+I S LVV I+ Y +GL+L DLI+EG++GL+R ++F+PERG++ STY WWI+Q I R + Sbjct: 88 DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL 159
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XANCP (RNA polymerase sigma factor rpoD OS=Xanthomonas campestris pv. campestris GN=rpoD PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 381 KARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 453
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XANAC (RNA polymerase sigma factor rpoD OS=Xanthomonas axonopodis pv. citri GN=rpoD PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 382 KARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 454
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_PSEFL (RNA polymerase sigma factor rpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 521 TGMKQSKVDKIL-------CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 TG+K +++ I K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 353 TGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 445 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |