CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CAUCR (RNA polymerase sigma factor rpoD OS=Caulobacter crescentus GN=rpoD PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 412 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 482
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSD2_BACSP (RNA polymerase sigma factor rpoD OS=Bacillus sp. GN=sigA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13 Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2 Query: 548 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 +I+ + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 132 RIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAI 208
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BUCBP (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13 Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 K + +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+QAI R+I Sbjct: 367 KAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 439
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRGR (RNA polymerase principal sigma factor hrdD OS=Streptomyces griseus GN=hrdD PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13 Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 2 Query: 518 ATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 + G + +++ ++ + +++ IRS LVV++A Y GL L DLIQEG+ GL+R ++F+ +G+K STY WWI+QAI R+I Sbjct: 78 SAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSI 164
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOS_COXBU (RNA polymerase sigma factor rpoS OS=Coxiella burnetii GN=rpoS PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13 Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 2 Query: 356 DYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKT-VAQAEEHESISKQLAKATGMKQSKVDKILCK-ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 D+ L+ KT T E+AE+ + + K E R + Q E + L A ++ K+ + + K + ++++++I + LVV IA Y +GL DLI+EG++GLL ++F+PERG++ STY WWI+Q I R I Sbjct: 42 DHGLIFAKTKK-ETTEKEDAELANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAK--EELKIARRVHKGDPKARKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAI 181
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDC_STRCO (RNA polymerase principal sigma factor hrdC OS=Streptomyces coelicolor GN=hrdC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13 Identity = 39/126 (30.95%), Postives = 71/126 (56.35%), Query Frame = 2 Query: 395 LTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIR 772 LT +E + ++ G + E +T E T ++ +++ + +E+++ ++R+ LVVS+A + +GL L D+IQEG++GL+R ++F+ +G+K STY WWI+QAI R Sbjct: 52 LTAEDEVRLATRIEAGVRAREELETADTGEP---------APTPRRRRTLEETVHDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATWWIRQAIER 168
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFA (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa GN=rpoD PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13 Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 479 AEEHESISKQLAKATGMKQSK-VDKIL----CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 AE+ SI + A + + K +++++ K ++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RG+K STY WWI+QAI R+I Sbjct: 343 AEQQASIDLEKANSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSI 447
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRR6 (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY WWI+QAI R I Sbjct: 130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRPN (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY WWI+QAI R I Sbjct: 130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRMU (RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY WWI+QAI R I Sbjct: 132 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 201 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |