CX671680

Overview
NameCX671680
Unique NameCX671680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_CAUCR (RNA polymerase sigma factor rpoD OS=Caulobacter crescentus GN=rpoD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  566 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            R++++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  412 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 482          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPSD2_BACSP (RNA polymerase sigma factor rpoD OS=Bacillus sp. GN=sigA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  548 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            +I+  + E++ R+  +   LVVSIA  Y G+G+   DLIQEG++GL++  ++F+  +G+K STY  WWI+QAI R I
Sbjct:  132 RIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAI 208          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_BUCBP (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            K + +++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RGYK STY  WWI+QAI R+I
Sbjct:  367 KAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 439          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDD_STRGR (RNA polymerase principal sigma factor hrdD OS=Streptomyces griseus GN=hrdD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  518 ATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            + G  + +++ ++ +   +++  IRS   LVV++A  Y   GL L DLIQEG+ GL+R  ++F+  +G+K STY  WWI+QAI R+I
Sbjct:   78 SAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSI 164          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOS_COXBU (RNA polymerase sigma factor rpoS OS=Coxiella burnetii GN=rpoS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  356 DYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKT-VAQAEEHESISKQLAKATGMKQSKVDKILCK-ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            D+ L+  KT     T  E+AE+  +  +  K  E R +   Q    E   + L  A   ++ K+ + + K + ++++++I +   LVV IA  Y  +GL   DLI+EG++GLL   ++F+PERG++ STY  WWI+Q I R I
Sbjct:   42 DHGLIFAKTKK-ETTEKEDAELANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAK--EELKIARRVHKGDPKARKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAI 181          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: HRDC_STRCO (RNA polymerase principal sigma factor hrdC OS=Streptomyces coelicolor GN=hrdC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 39/126 (30.95%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  395 LTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIR 772
            LT  +E  +   ++ G +  E  +T    E            T  ++  +++ +   +E+++ ++R+   LVVS+A  +  +GL L D+IQEG++GL+R  ++F+  +G+K STY  WWI+QAI R
Sbjct:   52 LTAEDEVRLATRIEAGVRAREELETADTGEP---------APTPRRRRTLEETVHDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATWWIRQAIER 168          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_XYLFA (RNA polymerase sigma factor rpoD OS=Xylella fastidiosa GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  479 AEEHESISKQLAKATGMKQSK-VDKIL----CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            AE+  SI  + A +  +   K +++++     K  ++++ ++ +   LV+SIA  Y  +GL   DLIQEG+IGL++   +F   RG+K STY  WWI+QAI R+I
Sbjct:  343 AEQQASIDLEKANSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSI 447          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRR6 (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E+++R+  +   LVVSIA  Y G+G+   DLIQEG++GL++   +F+  +G+K STY  WWI+QAI R I
Sbjct:  130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 199          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRPN (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E+++R+  +   LVVSIA  Y G+G+   DLIQEG++GL++   +F+  +G+K STY  WWI+QAI R I
Sbjct:  130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 199          
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STRMU (RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  569 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778
            E+++R+  +   LVVSIA  Y G+G+   DLIQEG++GL++   +F+  +G+K STY  WWI+QAI R I
Sbjct:  132 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAI 201          
The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RPOD_CAUCR2.164e-1347.89RNA polymerase sigma factor rpoD OS=Caulobacter cr... [more]
RPSD2_BACSP2.826e-1344.16RNA polymerase sigma factor rpoD OS=Bacillus sp. G... [more]
RPOD_BUCBP2.826e-1346.58RNA polymerase sigma factor rpoD OS=Buchnera aphid... [more]
HRDD_STRGR2.826e-1340.23RNA polymerase principal sigma factor hrdD OS=Stre... [more]
RPOS_COXBU3.691e-1334.27RNA polymerase sigma factor rpoS OS=Coxiella burne... [more]
HRDC_STRCO4.820e-1330.95RNA polymerase principal sigma factor hrdC OS=Stre... [more]
RPOD_XYLFA6.295e-1337.14RNA polymerase sigma factor rpoD OS=Xylella fastid... [more]
RPOD_STRR68.222e-1347.14RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRPN8.222e-1347.14RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRMU8.222e-1347.14RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E04-J8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bp
CTTCATCTCCAACTCACTCAACACTCCCTTCTCTCAAAACCCTTCACCCT
CTCCCCCCTCCATCACTCTCCTCTTCTCCATCTTCTTGCCTAACAAATAC
AATATAAATATTAACTTAGTCACCAATGAAGCACTTGCACTACACCCTGT
CATTGAATCAGCAACTGATGCCGCGGCATTGGCAAGCGCGGCAGTGCGTA
CTGCCAAAGATGCTGTGTCATTTGCTAATGGGGCTGAAGAGGTTTGCTTT
GATGATGGAGAATGTGAGAGTGTGTTGAAAATGATGAGGAGGAGAAGCAG
GAGAAAGAAAAGGACGAAAGAGAGTGATTTTTTGGATAAAGAAAATGGGG
AACTTGATTATAATTTGGTGAAGTGTAAGACGTCTAATTTGTATTTGACC
CCTAGTGAGGAGGCTGAAATTTGTTACTCTCTCAAGGAGGGAGCAAAGCT
GGAAGAAGCTAGAAAAACAGTTGCACAAGCTGAAGAACATGAATCAATCT
CAAAGCAGTTGGCTAAGGCCACAGGGATGAAACAAAGCAAAGTGGATAAG
ATTCTGTGTAAAGAAAGAGAATCGCAAGAGAGGATCATTCGAAGCTATCG
CAGCCTTGTTGTCTCTATAGCCACTGGTTATCAAGGCAAAGGATTAAGCC
TCAAAGATCTCATTCAGGAAGGGAGCATAGGGCTTCTTCGAGGGGCAAAA
AGATTCAATCCAGAGAGAGGATATAAGTTGTCAACTTATGTTTACTGGTG
GATTAAACAAGCTATTATTAGAACCATA
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