CX671680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAS (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAR (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAN (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain N315) GN=rpoD PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAM (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAAC (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain COL) GN=rpoD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAA8 (RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 326 DFLDKENGELDYNLVKCKTSN---LYLTPSEEAEICYSLKEGAKLEE---------ARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 DF D+ N D +LV K S+ L PS+ S G K+ + R + A+E ++K++ + + +S R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 57 DFFDQLNDN-DISLVNEKDSSDTDEKLNPSD-----LSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKS--------------RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RP32_CAUCR (RNA polymerase sigma-32 factor OS=Caulobacter crescentus GN=rpoH PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12 Identity = 27/69 (39.13%), Postives = 50/69 (72.46%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 766 ++ ++ +++ S+ LV IA GY+G GL + ++I EG++GL++ K+F PE+G++L+TY WWI+ +I Sbjct: 44 QDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASI 112
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RP32_CAUCN (RNA polymerase sigma-32 factor OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpoH PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12 Identity = 27/69 (39.13%), Postives = 50/69 (72.46%), Query Frame = 2 Query: 560 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 766 ++ ++ +++ S+ LV IA GY+G GL + ++I EG++GL++ K+F PE+G++L+TY WWI+ +I Sbjct: 44 QDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASI 112
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAES (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpoD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2 Query: 572 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAI 199
BLAST of CX671680 vs. ExPASy Swiss-Prot
Match: RPOD_STAEQ (RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2 Query: 572 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRTI 778 ++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R I Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAI 199 The following BLAST results are available for this feature:
BLAST of CX671680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671680 ID=CX671680; Name=CX671680; organism=Citrus sinensis; type=EST; length=778bpback to top |