CX671443

Overview
NameCX671443
Unique NameCX671443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.165e-33
Identity = 83/216 (38.43%), Postives = 128/216 (59.26%), Query Frame = -2
Query:    9 ERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKK 656
            E L   +R     +  + L  + +A  +A   H GQKR+SG+P+I HP+ V  IL EL +D  ++ AGLLHD+ EDT     + +  +FG  V  +V+G TK+ K+            +  +A+ +R+M +AM ++ RV+++KLADRLHNMRT+ ++   KQ   A ETL+++APLA  LGM  IK ELE+L+F     + Y ++ R VA+   K+
Sbjct:  103 EPLLRIVRANDPKIETSTLRQIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDSREDTEY-GLDDLRRDFGDVVGLLVDGVTKLDKV---------KFGEAAQAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEIVRLVAERAPKR 308          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: SPOT_MYCPN (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma pneumoniae GN=spoT PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 68/196 (34.69%), Postives = 113/196 (57.65%), Query Frame = -2
Query:   51 LRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDY 638
            L+ T    +P  + L+ +AL  + + H  QKR SGEPF IHP+  A  L E  +D  ++ AGLLHD +EDT V   + +   FG  +  +V   TK++   K K +  N   +D+    L  + ++  +EV  +++KLADRL N+ ++  +   KQ  IA ETL+++A +A  +GMY +K++L +LSF   + +++
Sbjct:   25 LQKTAQKFAPEVVALITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVTEAD-LTAIFGKEITDLVVKVTKITSESK-KQRQLNRKKEDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNF 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: SPOT_MYCGE (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma genitalium GN=spoT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 67/185 (36.22%), Postives = 109/185 (58.92%), Query Frame = -2
Query:   51 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDY 605
            E+EL+ +A   A   H+ QKR SGEPF IHP+  A  L E  +D  +I AGLLHD +EDT+  T   I   F   +  +V   TK++   K K ++  +  +++       + +   +E+ V+++KLADRL N+ ++  +P  KQ  IA ETL+++A +A  +GMY +K++L +LSF   + ++Y
Sbjct:   23 EIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLVEWNMDPITICAGLLHDIIEDTDQ-TEANIAMIFSKEIAELVTKVTKITNESK-KQRHLKNKKENLNLKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVKTKLADLSFKVLDLKNY 205          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 48/162 (29.63%), Postives = 98/162 (60.49%), Query Frame = -2
Query:   24 EVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAD 509
            E+  IL  L +D +++ A LL+  VE     T + ++EE+  T+  +V+G  ++  + +LK   E  + Q  + D++R+M L+M ++ R +++KLA+R+ N+R +   P   + + A E   ++APLA  LG+ Q+K E+E+ +F Y + + Y ++ +++++
Sbjct:   60 ELVEILVTLSMDADTLIAALLYPLVEGGCYST-DALKEEYSGTILHLVQGVEQMCAISQLKSTAEE-TAQAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLSE 219          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.382e-18
Identity = 54/170 (31.76%), Postives = 100/170 (58.82%), Query Frame = -2
Query:    6 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIAT-ETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 512
            VE+  IL EL +D E++   +L   V +  +  +E ++E+FGA + ++++G  ++  + +L   N +HS   ++ D++R+M LAM ++ R +I+KLA+R+  +R   H    +   +A  E   ++APLA  LG+ Q+K ELE+  F Y + E Y    R +A L ++++
Sbjct:   63 VEMVEILHELNMDAETLLTAMLFPIVAN-KLTDWESLKEKFGAKITKLLKGVLEMDNIRQL---NASHSANALQVDNVRRMLLAMVDDFRCVIIKLAERITFLRDAEHRCAEEDKVLAVKECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQY----RAIAKLLQERR 224          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_SHIFL (GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 50/159 (31.45%), Postives = 94/159 (59.12%), Query Frame = -2
Query:   36 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKR 512
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ +
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAK 216          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_ECOLI (GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 50/159 (31.45%), Postives = 94/159 (59.12%), Query Frame = -2
Query:   36 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKR 512
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ +
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAK 216          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_ECOL6 (GTP pyrophosphokinase OS=Escherichia coli O6 GN=relA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 50/159 (31.45%), Postives = 94/159 (59.12%), Query Frame = -2
Query:   36 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKR 512
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ +
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAK 216          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_ECO57 (GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 50/159 (31.45%), Postives = 94/159 (59.12%), Query Frame = -2
Query:   36 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKR 512
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ +
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAK 216          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: HDDC3_DANRE (HD domain-containing protein 3 OS=Danio rerio GN=hddc3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.010e-14
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = -2
Query:  165 AFEAHDGQKRRS--GEPFIIHPVEVARIL---GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSS 572
            A E H  Q+ +   G P+I HP+ VARIL   GE+  D E I A LLHDTVEDT+  TFE +E  FGATV RIV+G T    L K + + +             Q+  A     +  +VKLAD+L+N+R L+   P   S+
Sbjct:   16 AAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEIT-DVEVIQAALLHDTVEDTDT-TFEELESVFGATVARIVQGVTDDKSLPKAERERQ-------------QVEHAPHCSHQAKLVKLADKLYNLRDLNRCTPEGWSA 141          
The following BLAST results are available for this feature:
BLAST of CX671443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RELA_STRAT1.165e-3338.43GTP pyrophosphokinase OS=Streptomyces antibioticus... [more]
SPOT_MYCPN4.740e-2734.69Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
SPOT_MYCGE4.013e-2636.22Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
RELA_PHOAS3.638e-1929.63GTP pyrophosphokinase OS=Photobacterium angustum (... [more]
RELA_HAEIN1.382e-1831.76GTP pyrophosphokinase OS=Haemophilus influenzae GN... [more]
RELA_SHIFL1.805e-1831.45GTP pyrophosphokinase OS=Shigella flexneri GN=relA... [more]
RELA_ECOLI1.805e-1831.45GTP pyrophosphokinase OS=Escherichia coli (strain ... [more]
RELA_ECOL61.805e-1831.45GTP pyrophosphokinase OS=Escherichia coli O6 GN=re... [more]
RELA_ECO571.805e-1831.45GTP pyrophosphokinase OS=Escherichia coli O157:H7 ... [more]
HDDC3_DANRE6.010e-1441.13HD domain-containing protein 3 OS=Danio rerio GN=h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A12-B23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671443 ID=CX671443; Name=CX671443; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTATAGAGGTCTGCAACTCTTCTTTTGACCTTGGC
ATAATCTTCAGCATTTGTGTACATAAAGGATAGATTTTCAAGTTCAGACT
TAATTTGGTACATCCCTAACAATTTTGCCAAGGGAGCAAAGACCTGCAAT
GTCTCCGTTGCAATGCTGGACTGCTTATGTGGAGGCATGTGTGAAAGAGT
GCGCATGTTATGCAATCTATCAGCCAATTTGACTATGATAACACGGACCT
CCTCAGTCATGGCTAGAAACATTTGCCGTAGGTCATCAGCTTTAACATCT
TGCACTGAATGGTTTTCATTCTTACACTTTAATTTTCCCAGCTTTGATAC
CTTAGTCTCTCCCTCTACAATGCGGCGTACAGTAGCTCCAAACTCCTCCT
CTATTCTTTCAAAAGTAACAACATTTGTATCTTCAACTGTGTCATGTAGT
AATCCCGCAGCAATAGATTCCCAATCCAGTTCAAGTTCACCCAGAATACG
AGCAACTTCAACTGGATGAATGATGAAAGGCTCTCCACTCCGTCTTTTCT
GACCATCATGCGCCTCAAAAGCCAACATCAGAGCTCTACGGACCAATTCC
AATTCATTAGGTGAAAGGTATGATATGGTGGGCCTAAGATCCTCCCACAA
CCTTTCAGGAGAATCCTCTTTGAAGGCATCCGAAGAGACAGATGGAGACA
AACACAGCCGCCATCTTTTACAGGCAACATGAAGTAAACTTGACCTAGGG
AGTTTGCCAAGAAGAACAAGGTCAGAACCTTCAGTGCACCAACTTCCCAC
ATCA
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