CX671443

Overview
NameCX671443
Unique NameCX671443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: HDDC3_XENTR (HD domain-containing protein 3 OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.088e-13
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = -2
Query:  180 NELELVRRALMLAFEAHDGQKRRSGE--PFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 608
            ++  L+  A   A E H  Q+R+  E  P+I HP+ VARIL       D   + A LLHDTVEDTN  TFE IE  FG  VR IVE  T    L K++ K               QM  A     +  +VKLAD+L+N+R L    P
Sbjct:    3 SDAALILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALLHDTVEDTNT-TFEEIELHFGQDVRNIVEEVTDDKTLPKMERKR-------------LQMEHAPHCSQKAKLVKLADKLYNLRDLKRCTP 135          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: HDDC3_MOUSE (HD domain-containing protein 3 OS=Mus musculus GN=Hddc3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  180 FEAHDGQKRR----SGEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 569
            F AH  +++R     G P+I HP+ VARIL       D   + A LLHDTVEDT+  T + +E  FGA VRR+VE  T    L KL+ K +             Q+  A        +VKLAD+L+N+R L+   P
Sbjct:   14 FAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQ-------------QVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: HDDC3_HUMAN (HD domain-containing protein 3 OS=Homo sapiens GN=HDDC3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = -2
Query:  180 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 608
            +E   +  A   A   H  Q+R+   G P+I HP+ VARIL       D   + A LLHDTVEDT+  T + +E  FGA VRR+VE  T    L KL+ K               Q+  A        +VKLAD+L+N+R L+   P
Sbjct:    3 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKR-------------LQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135          
The following BLAST results are available for this feature:
BLAST of CX671443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HDDC3_XENTR5.088e-1339.46HD domain-containing protein 3 OS=Xenopus tropical... [more]
HDDC3_MOUSE2.138e-1138.24HD domain-containing protein 3 OS=Mus musculus GN=... [more]
HDDC3_HUMAN6.220e-1136.73HD domain-containing protein 3 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A12-B23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671443 ID=CX671443; Name=CX671443; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTATAGAGGTCTGCAACTCTTCTTTTGACCTTGGC
ATAATCTTCAGCATTTGTGTACATAAAGGATAGATTTTCAAGTTCAGACT
TAATTTGGTACATCCCTAACAATTTTGCCAAGGGAGCAAAGACCTGCAAT
GTCTCCGTTGCAATGCTGGACTGCTTATGTGGAGGCATGTGTGAAAGAGT
GCGCATGTTATGCAATCTATCAGCCAATTTGACTATGATAACACGGACCT
CCTCAGTCATGGCTAGAAACATTTGCCGTAGGTCATCAGCTTTAACATCT
TGCACTGAATGGTTTTCATTCTTACACTTTAATTTTCCCAGCTTTGATAC
CTTAGTCTCTCCCTCTACAATGCGGCGTACAGTAGCTCCAAACTCCTCCT
CTATTCTTTCAAAAGTAACAACATTTGTATCTTCAACTGTGTCATGTAGT
AATCCCGCAGCAATAGATTCCCAATCCAGTTCAAGTTCACCCAGAATACG
AGCAACTTCAACTGGATGAATGATGAAAGGCTCTCCACTCCGTCTTTTCT
GACCATCATGCGCCTCAAAAGCCAACATCAGAGCTCTACGGACCAATTCC
AATTCATTAGGTGAAAGGTATGATATGGTGGGCCTAAGATCCTCCCACAA
CCTTTCAGGAGAATCCTCTTTGAAGGCATCCGAAGAGACAGATGGAGACA
AACACAGCCGCCATCTTTTACAGGCAACATGAAGTAAACTTGACCTAGGG
AGTTTGCCAAGAAGAACAAGGTCAGAACCTTCAGTGCACCAACTTCCCAC
ATCA
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