CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.883e-50
Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = -2
Query:  153 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 767
            GSFDVT++A LPN VVMA +DEAEL HM  TAA  D  P  FRYPRG GIG++LP   +   LE+GKGRI+  G +VALL  GT ++    A+  LE+ GL  T+AD RF KPLD  LI  L K+HEV++T+EE SIGG G+HV+ + + +GL D  +K R + LPD +I+  +P  Q  +AGLT  HI  TV   L Q    +E
Sbjct:  434 GSFDVTYLATLPNFVVMAAADEAELVHMTYTAAEHDSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKALRQNSAGVE 636          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.165e-49
Identity = 105/198 (53.03%), Postives = 131/198 (66.16%), Query Frame = -2
Query:  174 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 767
            GSFD+ FM  LP MV+MA +DE EL  MVATAA IDDRPS FRYPRG G+G+++P   +  PLE+GKGRI+ EG  VA++ +GT +   L A+ LL + GL  TV DARF KPLD  L+  LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  432 GSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.165e-49
Identity = 105/198 (53.03%), Postives = 131/198 (66.16%), Query Frame = -2
Query:  174 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 767
            GSFD+ FM  LP MV+MA +DE EL  MVATAA IDDRPS FRYPRG G+G+++P   +  PLE+GKGRI+ EG  VA++ +GT +   L A+ LL + GL  TV DARF KPLD  L+  LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  432 GSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.570e-48
Identity = 100/192 (52.08%), Postives = 129/192 (67.19%), Query Frame = -2
Query:  192 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAAT 767
            G+FDV+ +A LPN  VMA +DEAEL HMV TAAA D  P   RYPRG G GVE+P   +G  LE+GKGR++ EG  VA+L +G  +   L A+ +LE+ G+  TVADARFC+PLD  LI  L + H  LIT+E+G++GGFG+ V+ +LA  G L+     R + LPD YIDHGSP +  A AGLT + I  T
Sbjct:  435 GAFDVSMLANLPNFTVMAAADEAELCHMVVTAAAHDSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDT 624          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.570e-48
Identity = 101/198 (51.01%), Postives = 129/198 (65.15%), Query Frame = -2
Query:  174 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 767
            G+FD+ +++ LPNM VMA +DEAEL HM+ATAAA +D P   RYPRG G GV LP  ++G  LE+GKGR++ +G  VA+L +G  ++    A+  LE+ GL +TVADARF KPLD  LI  L   H  LITVE+G++ GFG  V+  LA  G LDG    R L LPDR+ID  SPA+  A AGLT   IA      +G
Sbjct:  433 GAFDIGYLSALPNMTVMACADEAELVHMMATAAAHNDGPIALRYPRGEGTGVALP--DQGDVLEIGKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.869e-47
Identity = 104/207 (50.24%), Postives = 128/207 (61.84%), Query Frame = -2
Query:  153 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIP--LEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 767
            GSFD+T++A LPNMVVMA +DEAEL HM  TAA  D  P  FRYPRGNG GV LP     +P  LE+GKGR++ EG+ VA+L  GT +   L A+  LE+ GL  +V D RF KPLD  LIR    +HEV +TVEEGSIGG G+HV+   + +GL+D  +K R L LPD + D   P  Q   AGL    I  TV   L      +E
Sbjct:  434 GSFDITYLATLPNMVVMAAADEAELVHMTYTAAEHDAGPIAFRYPRGNGTGVALP----AVPQKLEIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKALRHNSAGVE 636          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.529e-46
Identity = 100/207 (48.31%), Postives = 135/207 (65.22%), Query Frame = -2
Query:  147 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 767
            GSFD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   RYPRGNG+GV L  G K I L +GKGR++  G++VA+L  GT ++  L A+  L++ GL  +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+   + +GL+D  +K R L LPDR+        Q A+AGL    I A V + L +  + +E++
Sbjct:  434 GSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLE-GEKEI-LPIGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHRNSKPVEVV 638          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.621e-45
Identity = 100/207 (48.31%), Postives = 134/207 (64.73%), Query Frame = -2
Query:  147 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 767
            GSFD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   RYPRGNG+GV L  G K I L +GKGR++  G++VA+L  GT ++  L A+  L++ GL  +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+   + +GL+D  +K R L LPDR+        Q A+AGL    I A V   L +  + +E++
Sbjct:  434 GSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLE-GEKEI-LPIGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQRNSKPVEVV 638          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.313e-38
Identity = 88/204 (43.14%), Postives = 121/204 (59.31%), Query Frame = -2
Query:  162 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVEL-PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 767
            G +D+ ++ C+PN+V+MAP DEAEL  M+ T     D P   RYPRGNG+GV L   G + +P  +GKG IL  G+ + LLGYGT V + +  + +L  HG+  TV +ARF KPLD  LI  LAK    ++T+EEG + GGFGS V + L    +L   V  +   +PD+ +DH  P +  A  GLT S IA  V     +T+E
Sbjct:  432 GMYDIAYLRCIPNLVIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGLGVPLMEEGWEALP--IGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQE 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 89/185 (48.11%), Postives = 121/185 (65.41%), Query Frame = -2
Query:  216 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 767
            GSFD++++ C+PNM + APSDEAE + +++T     D P   RYPRG+G G  LP  +   PL +GKG     G R+A+L +GT V   LA +  L+     LTVAD RF +PLD ALIR LA +H++L+TVEE ++ GG GS V ++LA  GL    V  R L LPDR++DHG+PA+ LA+ GL
Sbjct:  433 GSFDLSYLRCVPNMTIAAPSDEAECWRLLSTGYH-HDGPFAVRYPRGSGPGAALPEADLD-PLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEALD-----LTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAGL---DVPVRHLGLPDRFVDHGTPAELLAEVGL 607          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ERYLH4.883e-5050.731-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_CAUCR3.165e-4953.031-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN3.165e-4953.031-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_RHOCA4.570e-4852.081-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS2_JANSC4.570e-4851.011-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_SPHAL3.869e-4750.241-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS1_ZYMMO9.529e-4648.311-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS2_ZYMMO3.621e-4548.311-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS_CYAP77.313e-3843.141-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ALHEH9.551e-3848.111-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
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