CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.247e-37
Identity = 86/203 (42.36%), Postives = 116/203 (57.14%), Query Frame = -2
Query:  162 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 767
            G +D+ ++ C+PNM +MAP DEAEL  M+ T     D P   RYPRGNGIGV L       PL +GKG IL  G+ + +LGYGT V + L A+  L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V +  +   +L   V  +   +PDR +DH +P    A  GLT   IA  +  +    R+
Sbjct:  433 GMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEGWE-PLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQVFFSNRQ 631          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37
Identity = 86/204 (42.16%), Postives = 119/204 (58.33%), Query Frame = -2
Query:  159 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 767
            G +D+ ++ CLPNMV+MAP DEAEL  M+ T     D P   RYPRGNG GV L       PLE+GKG +L  GE + L+ YG+ V   +  + +L+ HG+   V +ARF KPLD  LI  LAK    ++T+EEG + GGFGS V++ L    +L   ++   L +PD  ++H SP +  A  GLTP  +A T+    G  + A
Sbjct:  433 GMYDIAYLRCLPNMVLMAPKDEAELQRMIVTGINYTDGPIALRYPRGNGYGVALMEEGWE-PLEIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLR---LGVPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRA 632          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37
Identity = 86/199 (43.22%), Postives = 128/199 (64.32%), Query Frame = -2
Query:  174 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 767
            G++D++++  +P M +MAP+DE EL HM+ TA A++ +P   RYPRG  +G  LPP    + LE+G+GR L +GE  A+L  G  V   L A+A+LE  G+ ++V DARF KPLD  L++ +A  H V++ VEE ++ GGFGS V++ L+  G LD  +K R + +PDRYI HG+  +   + GL    IA T+  +LG
Sbjct:  429 GAYDLSYLRTVPGMTIMAPADENELRHMLHTAVALN-KPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVA-MHGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.241e-36
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVEL-PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+PNM +MAP DEAEL  MV T       P   RYPRGNG+GV L   G + +P  +GKG IL  G+ + LLGYGT V + L  + +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V++ L    +L   V  +   +PD+ +DH +P +  A  GLT   IA  V
Sbjct:  433 GMYDIAYLRCIPNMTIMAPKDEAELQRMVVTGINHTSGPIAMRYPRGNGLGVPLMEEGWEALP--IGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDANIL---VPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQV 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.168e-35
Identity = 86/201 (42.79%), Postives = 116/201 (57.71%), Query Frame = -2
Query:  168 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 767
            G +D+ ++ C+PN+V+MAP DEAEL  M+ T           RYPRGNGIGV L       PLE+GK  IL  G+ V LLGYG+ V   L  + LL  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L  + +L   V  + L +PD  +DH +P       GLTP+ +A  +   L +T
Sbjct:  433 GMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEGWE-PLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASLFKT 629          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.992e-35
Identity = 87/198 (43.94%), Postives = 118/198 (59.60%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            G FDV ++ CLPNMV+MAP DE EL HM+ATA A ++ P   RYPRG+G+GV +    + +P  +G+  +L EG  VA++  G  V     A+ +L   G+R TV +ARF KPLD +LI   A+    L+TVEE  + GGFGS V++ LA  GLL   ++   L L DR+ DH S A    QAG+    IA+     L
Sbjct:  423 GVFDVAYLRCLPNMVLMAPKDEDELRHMLATALAYEEGPIALRYPRGSGVGVPMLGEPRVLP--IGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAGLLIPVLR---LGLADRFFDHASQASLRRQAGIDAESIASRTLAFL 615          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.397e-35
Identity = 85/195 (43.59%), Postives = 116/195 (59.49%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVEL-PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+PNMVVMAP DE EL  MV T     D     RYPRGNG GV L   G + I   +GKG IL  G+ V +LGYG+ V S +  + +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L  + +L   ++   L +PD+ +DH  P +  A  GLTPS +A  +
Sbjct:  433 GMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPLMEEGWEAIT--IGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVLVPVLR---LGVPDKLVDHAKPDESKADLGLTPSQMAERI 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.397e-35
Identity = 85/201 (42.29%), Postives = 116/201 (57.71%), Query Frame = -2
Query:  168 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 767
            G +D+ ++ C+PN+ +MAP DEAEL  MV T     D P   RYPRG+G+GV L       P+ +GKG IL  G+ V L+GYGT V   L  + +L+ HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  +   +PD+ +DH  P +  A  GLT   IA  +  +   T
Sbjct:  433 GLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEGWE-PVSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEAL-LDH--DVVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIRQLFFNT 629          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.437e-35
Identity = 83/200 (41.50%), Postives = 117/200 (58.50%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G +D+ ++ CLPNMV+MAP DEAEL  M+ T     D P   RYPRG+G+GV L       PL +GK   L  G+ V LL YGT V      + +L  HG+R TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V++ L    ++    +   + +PD+ ++H +P    A+ GLTP+ +A  V  +L Q
Sbjct:  432 GMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMRYPRGSGLGVGLMEEGWE-PLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQVMAPVTR---IGVPDQLVEHATPDQSKAELGLTPAQVAERVLGLLKQ 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.795e-35
Identity = 84/195 (43.08%), Postives = 117/195 (60.00%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+P MV+MAP DEAEL  MV T       P   RYPRG+G+GV  P   +G  PL +GK  +L  G  V +L YG+ V   L A+ +L+ HG+  TV +ARF KPLD  LI  LA+   +++TVEEG + GGFGS V + L LD   D  V    L +PD +++H +P + LA+ GL  + IA  +
Sbjct:  438 GMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTQGPIAMRYPRGSGVGV--PLAEEGWEPLPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEAL-LDA--DLAVPLLRLGVPDVWVEHATPEESLAELGLNSAGIAERI 627          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CYAP81.247e-3742.361-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_THEEB8.086e-3742.161-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_MAGSM8.086e-3743.221-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_MICAN5.241e-3643.591-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_SYNY31.168e-3542.791-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_THERP1.992e-3543.941-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_TRIEI3.397e-3543.591-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_CYAA53.397e-3542.291-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ACAM14.437e-3541.501-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_SYNJB5.795e-3543.081-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
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