CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.795e-35
Identity = 84/194 (43.30%), Postives = 116/194 (59.79%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+PN+V+MAP DEAE+  MV T       P   R+PRGNG GV L       PLE+GKG IL  G+ V ++GYGT V   + A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  + + +PD  ++H +P +  A+ GLT   IA  V
Sbjct:  433 GMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEYTTGPIAMRFPRGNGYGVPLMEEGWE-PLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL-LDA--DVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERV 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.568e-35
Identity = 89/194 (45.88%), Postives = 122/194 (62.89%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G+FD++++ C+PNMVVMAPSDE E   ++ TA  + D P+  RYPRG G G E       +PL  G+G +  +G+ +A+L +G+ V   LAA+  L++     +VAD RF KPLD ALIR LA SHE+L+TVEE  + GG GS V++ LA  G+   TV    L LPD Y++HG PA  LA  GL  + I  +V
Sbjct:  429 GAFDLSYLRCIPNMVVMAPSDENECRQLLYTAF-LHDGPTAVRYPRGTGPGCEPVAAMTALPL--GQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.884e-35
Identity = 85/197 (43.15%), Postives = 119/197 (60.41%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLV---LPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+P M+VM PSDE E+  M+ T    +  P+  RYPRG+G    + P  +  PLE+GK  +   G +VALL +G  +   L     L++     TV D RF KPLD AL+R LA SHE+L+TVEE SI GG GS V +FLA +G+L      RP++   LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  440 GSFDLSYLRCIPGMLVMTPSDENEMRRMLTTGYHFEG-PAAVRYPRGSGPNASIEPALE--PLEIGKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVL------RPILHLGLPDYYVEHAKPSEMLAECGLDAAGIEVAV 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.884e-35
Identity = 84/194 (43.30%), Postives = 116/194 (59.79%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+PN+V+MAP DEAE+  MV T       P   R+PRGNG GV L       PLE+GKG IL  G+ V ++GYGT V   + A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  + + +PD  ++H +P +  A+ GLT   IA  V
Sbjct:  433 GMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEHTTGPIAMRFPRGNGYGVPLMEEGWE-PLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL-LDA--DVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERV 622          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.291e-34
Identity = 85/200 (42.50%), Postives = 124/200 (62.00%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD+++M C+PNMV+MAPSDE E   M+ T       PS  RYPRGNG+G   P  ++   LE+GKGR++ +GE+VA+L +GT +     A+AL  +  L  TVAD RF KPLD ALIR LA  H+VLIT+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I   + + L +
Sbjct:  433 GAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFL-----ANALEAAEALNATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.291e-34
Identity = 85/194 (43.81%), Postives = 120/194 (61.86%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+P M+VM PSDE EL  ++ T    D  P+  RYPRG+G    + P  +  P+E+GKG +   G +VALL +G  +     A A+  + GL  TVAD RF KPLD AL+R LA SHE+L+++EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  438 GSFDISYLRCIPGMLVMTPSDEDELRKLLTTGYLFDG-PAAVRYPRGSGPNHPIDPDLQ--PVEIGKGVVRRRGGKVALLVFGVQL-----AEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SHEAM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.686e-34
Identity = 82/194 (42.27%), Postives = 119/194 (61.34%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G+FD+++M C+PNMV+MAPSDE E   M  T    ++ PS  RYPRG+  G E       +P  +GKG +  +G+++A+L +GT +     A+AL  +  L  TVAD RF KPLD AL+  LA SH+VL+TVEE +I GG GS V++FLA    L   ++   + +PD +I HG P + L++ GL  + I   +
Sbjct:  433 GAFDLSYMRCIPNMVIMAPSDENECRQMFYTGYCYNEGPSAVRYPRGSATGAEQIEEMTALP--IGKGVMRRQGQKIAILNFGTTL-----AAALTAAESLNATVADMRFVKPLDEALLLELAASHDVLVTVEENAIMGGAGSGVLEFLASKNRLKPLLQ---IGIPDEFIKHGGPEEILSELGLDAAGIEGQI 616          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 84/200 (42.00%), Postives = 124/200 (62.00%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD+++M C+PNMV+MAPSDE E   M+ T       PS  RYPRGNG+G   P  ++   LE+GKGR++ +GE+VA+L +GT +     A+AL  +  L  TVAD RF KPLD AL+R LA  H+VLIT+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I   + + L +
Sbjct:  433 GAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFL-----ANALEAAEALNATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+P M+VM PSDE EL  ++ T    D  P+  RYPRG+G    + P  +  P+E+GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  438 GSFDISYLRCIPGMLVMTPSDEDELRKLLTTGYLFDG-PAAVRYPRGSGPNHPIDPDLQ--PVEIGKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+P M+VM PSDE EL  ++ T    D  P+  RYPRG+G    + P  +  P+E+GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  438 GSFDISYLRCIPGMLVMTPSDEDELRKLLTTGYLFDG-PAAVRYPRGSGPNHPIDPDLQ--PVEIGKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ANAVT5.795e-3543.301-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_LARHH7.568e-3545.881-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_PSEU59.884e-3543.151-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_ANASP9.884e-3543.301-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_VIBVY1.291e-3442.501-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PSEA71.291e-3443.811-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SHEAM1.686e-3442.271-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_VIBVU2.202e-3442.001-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PSEAE2.876e-3443.811-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEAB2.876e-3443.811-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
back to top