CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+P M+VM PSDE EL  ++ T    D  P+  RYPRG+G    + P  +  P+E+GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  438 GSFDISYLRCIPGMLVMTPSDEDELRKLLTTGYLFDG-PAAVRYPRGSGPNHPIDPDLQ--PVEIGKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 85/194 (43.81%), Postives = 114/194 (58.76%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ CLPNMV+MAP DEAEL  M+ T     D P   RYPRGNG GV L       PL +GK  +L +G+ + +L YG+ V   L A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++TVEEG  IGGFGS V++ L    +L   V    + +PD  ++H +P    AQ GLT + IA  V
Sbjct:  431 GMYDIAYLRCLPNMVLMAPKDEAELQQMLVTGINYMDGPIGLRYPRGNGYGVALMEEGWE-PLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERV 620          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.407e-34
Identity = 83/200 (41.50%), Postives = 123/200 (61.50%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD++FM C+PNMV+MAPSDE E   M+ T       PS  RYPRG+G+G E+    +   LE+GKGR++ +GE+VA+L +GT + + L A+       L  TVAD RF KPLD ALIR LA  H+VL+T+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I  ++   L +
Sbjct:  433 GAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTEIE--KEFTALEIGKGRVVRKGEKVAILSFGTFLPNALEAAK-----NLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKIIKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.367e-34
Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD++FM C+PNMV+MAPSDE E   M+ T       PS  RYPRG+G+G ++        LE+GKGRI+ +GE+VA+L +GT + + L A+       L  TVAD RF KPLD ALIR LA  H+VL+T+EE +I GG G+ V++F+  D ++   +    L LPDR++  G+  +     GL    I  ++ + L +
Sbjct:  433 GAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTDIEKDFTA--LEIGKGRIVRKGEKVAILSFGTFLGNALEAA-----ENLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAGGAGAGVIEFMMQDKIIKPVLN---LGLPDRFVPQGTQDELHEDLGLDAKGIEKSINDYLAK 621          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_THISH (1-deoxy-D-xylulose-5-phosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.093e-33
Identity = 83/194 (42.78%), Postives = 122/194 (62.89%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            GSFD++++ C+PN+ VMAP+DE E   M++T   +D  P+  RYPRG G G  L PG   +P  VGK ++  +G  VALL +G  + + LAA+  L++     TV + RF KPLD AL+R +A+ H++L+T+E+  + GG GS V + LA+ G+   TV    L LPDR+ +HGS  + L++AGL    I A V
Sbjct:  432 GSFDLSYLRCVPNLTVMAPADEDECRRMLSTGFHLDG-PAAVRYPRGKGPGAALDPGLDTLP--VGKAQLRRKGRGVALLAFGAVLPAALAAAEPLDA-----TVVNMRFVKPLDEALVREMAEGHDLLVTLEDNVVAGGAGSAVAESLAVQGI---TVPLLHLGLPDRFQEHGSREELLSEAGLDAEGILAAV 614          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.427e-33
Identity = 86/205 (41.95%), Postives = 128/205 (62.44%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD+++M C+PNM++MAP+DE E   M+ T       PS  RYPRGNG+GVEL   +    LE+GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  433 GAFDLSYMRCIPNMLIMAPADENECRQMLYTGHQ-HQGPSAVRYPRGNGMGVELE--SSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.427e-33
Identity = 86/205 (41.95%), Postives = 128/205 (62.44%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD+++M C+PNM++MAP+DE E   M+ T       PS  RYPRGNG+GVEL   +    LE+GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  433 GAFDLSYMRCIPNMLIMAPADENECRQMLYTGHQ-HQGPSAVRYPRGNGMGVELE--SSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_VIBC3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.427e-33
Identity = 86/205 (41.95%), Postives = 128/205 (62.44%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            G+FD+++M C+PNM++MAP+DE E   M+ T       PS  RYPRGNG+GVEL   +    LE+GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  433 GAFDLSYMRCIPNMLIMAPADENECRQMLYTGHQ-HQGPSAVRYPRGNGMGVELE--SSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.427e-33
Identity = 84/209 (40.19%), Postives = 122/209 (58.37%), Query Frame = -2
Query:  144 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 767
            GSFD++F+ C+P MV+M PSDE EL  M+ T    +  P+  RYPRG G    +    +  P+E+GKG +  +G +VALL +G  +   L  +  L++     TV D RF KP+D AL+R +A SH++L+T+EE +I GG G  V +FLA + +L   +    L LPD Y++H  PA  LA+ GL    I A V       RE LE+++
Sbjct:  441 GSFDLSFLRCIPGMVIMTPSDENELRKMLTTGHLYNG-PAAVRYPRGTGPNATIEKDLE--PIEIGKGVVRRQGSKVALLVFGVQMAEALKVAETLDA-----TVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEVGIEAAV-------RERLELLN 631          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.864e-33
Identity = 83/195 (42.56%), Postives = 115/195 (58.97%), Query Frame = -2
Query:  189 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 767
            G +D+ ++ C+P MV+MAP DEAEL  MV T       P   RYPRG G+GV  P   +G  P+ +GK  +L  G  V +L YG+ V   L A+ +L+ HG+  TV +ARF KPLD  LI  LA+   +++TVEEG + GGFGS V + L LD   D  V    L +PD +++H +P + LA+ GL    IA  +
Sbjct:  438 GMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGV--PLAEEGWEPIPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEAL-LDA--DIRVPLLRLGVPDVWVEHATPEESLAELGLNSVGIAERI 627          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_PSEA82.876e-3443.811-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CYAP42.876e-3443.811-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_VIBPA6.407e-3441.501-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBHB8.367e-3442.001-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_THISH1.093e-3342.781-deoxy-D-xylulose-5-phosphate synthase OS=Thioalk... [more]
DXS_VIBCM1.427e-3341.951-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBCH1.427e-3341.951-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBC31.427e-3341.951-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PSEPF1.427e-3340.191-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SYNJA1.864e-3342.561-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
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