CV712490

Overview
NameCV712490
Unique NameCV712490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41_DROME (Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=CG8408 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  436 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 723
            + + R+ L NYMLFLR+TP LPN FINLASP++ +P HIF L T  G+ P S I ++AG  L  + S  + + + ++ +L       +LP LLK K
Sbjct:  218 VEEYRDSLFNYMLFLRMTPILPNWFINLASPVIGVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMACACASLLPGLLKNK 313          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: T41AB_DANRE (Transmembrane protein 41A-B OS=Danio rerio GN=tmem41ab PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.646e-17
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = -2
Query:  436 ELVACIQ--IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 744
            E VA +Q  + + R  L  ++LFLR  P  PN F+N+ SPI++IP  IFF + LIGLIP ++I V  G  L ++ S+ D++ + TLL L LI  V +LP  L R+
Sbjct:  148 EKVAMLQRMVEENRSSLFFFLLFLRFFPMTPNWFLNVTSPILNIPIPIFFFSILIGLIPYNFICVHTGAVLSEINSLDDIFSWFTLLQLLLIACVALLPGALIRR 252          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: T41AA_DANRE (Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            ++ + R  L  ++LFLR  P  PN F+N+ SPI++IP  +FF+A  IGL+P ++I V+ G  L  + S+ DL+ +  +L L L   V +LP  L RK
Sbjct:  162 KVEENRSSLFFFLLFLRFFPMSPNWFLNMTSPILNIPVTLFFMAVFIGLMPYNFICVQTGSMLSQISSLDDLFSWSVVLKLLLTACVALLPGALIRK 258          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41_CAEEL (Transmembrane protein 41 homolog OS=Caenorhabditis elegans GN=tag-175 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  436 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 723
            ++K R+  LNYM+FLR+TP +PN  IN+ASP++D+P   FF  T +G+ P S++ ++AG  L  L      + + ++++L     + + P LLK+K
Sbjct:  147 LSKHRDDFLNYMIFLRVTPIVPNWLINIASPVLDVPLAPFFWGTFLGVAPPSFLYIQAGSTLEQLSHTSVAWSWSSIVLLTGSAILSLAPILLKKK 242          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41A_MOUSE (Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  439 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILP-TLLKR 726
            ++ + R  L  ++LFLR+ P  PN F+NL++PI++IP   FF + LIGLIP ++I V+ G  L  L S+  L+ ++T+L L  I  V ++P TL+K+
Sbjct:  145 KVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWETVLKLLAIALVALVPGTLIKK 241          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41A_HUMAN (Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  439 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILP-TLLKR 726
            ++ + R  L  ++LFLR+ P  PN F+NL++PI++IP   FF + LIGLIP ++I V+ G  L  L S+  L+ + T+  L  I  V ++P TL+K+
Sbjct:  145 KVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWDTVFKLLAIAMVALIPGTLIKK 241          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41A_BOVIN (Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.224e-13
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  439 IFRFEFASFC*NELVACIQ--IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILP-TLLKR 780
            +F  +   F   + VA +Q  + + R  L  ++LFLR+ P  PN F+NL++PI++IP   FF + LIGLIP ++I V+ G  L  L S+  L+ ++T   L  I  V ++P TL+K+
Sbjct:  125 VFGKQLVVFYFPDKVALLQKKVEENRNGLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTLTSLDALFSWETAFKLLAIALVALVPGTLIKK 241          
The following BLAST results are available for this feature:
BLAST of CV712490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TM41_DROME4.330e-1743.75Transmembrane protein 41 homolog OS=Drosophila mel... [more]
T41AB_DANRE9.646e-1743.81Transmembrane protein 41A-B OS=Danio rerio GN=tmem... [more]
T41AA_DANRE5.293e-1540.21Transmembrane protein 41A-A OS=Danio rerio GN=tmem... [more]
TM41_CAEEL1.179e-1437.50Transmembrane protein 41 homolog OS=Caenorhabditis... [more]
TM41A_MOUSE4.481e-1441.24Transmembrane protein 41A OS=Mus musculus GN=Tmem4... [more]
TM41A_HUMAN1.304e-1340.21Transmembrane protein 41A OS=Homo sapiens GN=TMEM4... [more]
TM41A_BOVIN2.224e-1337.61Transmembrane protein 41A OS=Bos taurus GN=TMEM41A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001H10_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712490 ID=CV712490; Name=CV712490; organism=Citrus sinensis; type=EST; length=790bp
TTGCTATTCAGATTATAAATGAATTCATACATCAGTTACAACAGAATAAG
ACTAAAAGATACAGCTGCAAAGCTACCATTGTTACTAATTGATGGCCAAG
ATCACAAAAAGGGAGTATAATGACATTGTTCTATAAAATTTCTAGCCCCT
AAATTGTCATATAATCCATTAGGGAGGTGAAGAATTCAGTATAGGTAGAA
AGAACTTTGTATCTATCATCATTTGTGCTGTCAGGGGGCATTGTTATGAA
GTGTGTATCATAATGGACGGTAAACAATTACGTCCAATTCTTTGAAACAG
CCACTTGAGGCCCTGCAGCTGTATCCCTCGTTCAGATCCTGTAATTTTCA
ATGTTCAAAACATCCGCTGCTATCATAAGCTGTGCTTTCAATAGCAGGGT
GGTAGGGACCTTACCAACTTTCATTCATAGATTCGCTTCCTCTTCAAGAG
AGTGGGTAAGATGATGACAGACCCGATGAGAAAAAGCACAAGCAATGTTT
TAAAATCATATAGATCCTTGACTGACTGGAGATCTCCAAGTGCGAGGCCA
GCTCTGACAGTAATGTAGGAAGCTGGAATAAGACCAATCAAAGTTGCCAA
AAAGAAAATATGAAATGGTATGTCGACAATTGGAGATGCCAAATTGATAA
AAAGGTTGGGCAACGAAGGAGTTATTCTCAAAAAGAGCATGTAATTCAGC
AACTTTTCCCTGCGCTTTGCTATCTGAATGCACGCAACCAATTCATTTTA
ACAAAAAGAAGCAAACTCAAATCTGAAAATATAACCACAA
back to top