CV712490

Overview
NameCV712490
Unique NameCV712490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: Y4958_ARATH (Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.088e-44
Identity = 86/101 (85.15%), Postives = 97/101 (96.04%), Query Frame = -2
Query:  424 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRIYE 726
            +IAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+GL+PASYITVRAGLALGDL+SVKDLYDFKTL VLFLIGS+ I P LLKRKR+YE
Sbjct:  187 EIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASYITVRAGLALGDLRSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 287          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41_DICDI (Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.008e-23
Identity = 44/96 (45.83%), Postives = 76/96 (79.17%), Query Frame = -2
Query:  436 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 723
            ++++R+ LLNY++FLRITP LPN FINLASP++D+P H F + T IG++PA+++ V+AG+ + ++Q+  D++D K++L +  +  + ILPTL+++K
Sbjct:  235 LSQKRDNLLNYIVFLRITPFLPNWFINLASPLLDVPIHTFAIGTFIGIMPATFLAVKAGIQIQNIQNPSDIFDLKSILTMAALALLSILPTLIQKK 330          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_CHICK (Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.042e-19
Identity = 39/97 (40.21%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + +L VL ++  + ILP L ++K
Sbjct:  167 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSLFVLMILAILSILPALFQKK 263          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_DANRE (Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ K RE L+NY++FLRITP LPN FIN+ SP++++P  +FFL T +G+ P S++ + AG  L  L +  +   + +LLVL ++  V ILP   ++K
Sbjct:  180 QVDKHREHLINYIIFLRITPFLPNWFINITSPVINVPLGVFFLGTFLGVAPPSFVAINAGTTLYKLTTAGEAVSWNSLLVLGVLAVVSILPVCFQKK 276          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_XENTR (Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 37/97 (38.14%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + R+ L+NY++FLRITP LPN FIN+ SP++++P  +FFL T IG+ P S++ ++AG  L  L +  +   + ++++L ++  + ILP + ++K
Sbjct:  176 QVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSVIILMVLAVLSILPAIFQKK 272          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_XENLA (Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 37/97 (38.14%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + R+ L+NY++FLRITP LPN FIN+ SP++++P  +FFL T IG+ P S++ ++AG  L  L +  +   + ++++L ++  + ILP + ++K
Sbjct:  176 QVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSVIILMVLAVLSILPAIFQKK 272          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_HUMAN (Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18
Identity = 36/97 (37.11%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + ++ +L ++  + ILP + ++K
Sbjct:  189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKK 285          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_RAT (Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.999e-18
Identity = 36/97 (37.11%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + ++ +L ++  + ILP + ++K
Sbjct:  189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSVFILMILALLSILPAIFQKK 285          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_MOUSE (Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.725e-18
Identity = 35/97 (36.08%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L  L +  +   + ++ +L ++  + ILP + +++
Sbjct:  189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLHQLTTAGEAVSWSSVFILMVLALLSILPAIFQKQ 285          
BLAST of CV712490 vs. ExPASy Swiss-Prot
Match: TM41B_PONAB (Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.139e-17
Identity = 35/97 (36.08%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  436 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 726
            Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P  +FF+ T +G+ P S++ ++AG  L    +  +   + ++ +L ++  + ILP + ++K
Sbjct:  189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLHQPTTAGEAVSWNSIFILMILAVLSILPAIFQKK 285          
The following BLAST results are available for this feature:
BLAST of CV712490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
Y4958_ARATH7.088e-4485.15Uncharacterized membrane protein At4g09580 OS=Arab... [more]
TM41_DICDI9.008e-2345.83Transmembrane protein 41 homolog OS=Dictyostelium ... [more]
TM41B_CHICK6.042e-1940.21Transmembrane protein 41B OS=Gallus gallus GN=TMEM... [more]
TM41B_DANRE1.031e-1843.30Transmembrane protein 41B OS=Danio rerio GN=tmem41... [more]
TM41B_XENTR1.758e-1838.14Transmembrane protein 41B OS=Xenopus tropicalis GN... [more]
TM41B_XENLA1.758e-1838.14Transmembrane protein 41B OS=Xenopus laevis GN=tme... [more]
TM41B_HUMAN2.296e-1837.11Transmembrane protein 41B OS=Homo sapiens GN=TMEM4... [more]
TM41B_RAT2.999e-1837.11Transmembrane protein 41B OS=Rattus norvegicus GN=... [more]
TM41B_MOUSE8.725e-1836.08Transmembrane protein 41B OS=Mus musculus GN=Tmem4... [more]
TM41B_PONAB1.139e-1736.08Transmembrane protein 41B OS=Pongo abelii GN=TMEM4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H10_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712490 ID=CV712490; Name=CV712490; organism=Citrus sinensis; type=EST; length=790bp
TTGCTATTCAGATTATAAATGAATTCATACATCAGTTACAACAGAATAAG
ACTAAAAGATACAGCTGCAAAGCTACCATTGTTACTAATTGATGGCCAAG
ATCACAAAAAGGGAGTATAATGACATTGTTCTATAAAATTTCTAGCCCCT
AAATTGTCATATAATCCATTAGGGAGGTGAAGAATTCAGTATAGGTAGAA
AGAACTTTGTATCTATCATCATTTGTGCTGTCAGGGGGCATTGTTATGAA
GTGTGTATCATAATGGACGGTAAACAATTACGTCCAATTCTTTGAAACAG
CCACTTGAGGCCCTGCAGCTGTATCCCTCGTTCAGATCCTGTAATTTTCA
ATGTTCAAAACATCCGCTGCTATCATAAGCTGTGCTTTCAATAGCAGGGT
GGTAGGGACCTTACCAACTTTCATTCATAGATTCGCTTCCTCTTCAAGAG
AGTGGGTAAGATGATGACAGACCCGATGAGAAAAAGCACAAGCAATGTTT
TAAAATCATATAGATCCTTGACTGACTGGAGATCTCCAAGTGCGAGGCCA
GCTCTGACAGTAATGTAGGAAGCTGGAATAAGACCAATCAAAGTTGCCAA
AAAGAAAATATGAAATGGTATGTCGACAATTGGAGATGCCAAATTGATAA
AAAGGTTGGGCAACGAAGGAGTTATTCTCAAAAAGAGCATGTAATTCAGC
AACTTTTCCCTGCGCTTTGCTATCTGAATGCACGCAACCAATTCATTTTA
ACAAAAAGAAGCAAACTCAAATCTGAAAATATAACCACAA
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