CX301564

Overview
NameCX301564
Unique NameCX301564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 1
Query:   16 HDAFFYYFSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKG-KEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTI 453
            H      + F+ RR +SKF   ++KR+  ++ N  P+S+SR+   +K  K  KIAV VGTV DD RLL+ P + V ALRFTETAR+RI+KAGG+ L+ DQ AL  P+G+NT L++G    RE  K+FG    +   H    V+   I
Sbjct:   25 HALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGI 171          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.003e-27
Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRL--------VRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFG 396
            + F+ +R +S F   + +R+  SR N APISLSR+        V   KGK+  IAVIVG V DD R+  +PA++V ALRF+++AR RI  AGGE LT DQLA+ AP G NT LLRGRKS RES+K+FG
Sbjct:   33 YKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG 160          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 2.918e-27
Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDK-IAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447
            + F+ RR   KF   +++R+ MSR N+ P+SL+R+   +K  GK++K +AV++GTVT+D R+++VP + V ALR T+ AR RILK GG++ T DQLAL +P G NT+L++G+++ RE  K+FG    V + +T   V+ +
Sbjct:   32 YRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSK 171          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GK-EDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447
            + F+ RR   KF   I++R+ MSR N  PISLSR+ + +K  GK E+ IAV+VGTVT+D R L  P + V ALR TE AR RILK GG++ T DQLAL AP G NT+L++G ++ RE+  +FG    V + +T   V+ +
Sbjct:   32 YRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSK 171          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.109e-26
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVN 414
            + F+ RR D  F   ++KR+ M R   AP+SLS+L ++++ + D  AV+VGTVT+D R+  VP + V ALR TETAR RIL +GGEVLT DQL  R+P GS   LLRG    RE++K+F +    N
Sbjct:   33 YKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGN 158          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRL--------VRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFG 396
            + F+ +R  S F   + +R+  SR N APISLSR+        V   K K   IAV+VG V DD R+  +PA++V ALRF+++AR  I+ AGGE LT DQLA+ AP G NT LLRGRKS RES+++FG
Sbjct:   33 YKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG 160          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.226e-25
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVN 414
            F F+ RR D  F   ++KR+ M R   AP+SLS+L ++++ + +  AV++GTVT D R+  VP + V ALR TETAR RIL +GGEVLT DQL  R+P G    LLRG    RE++K+F +    N
Sbjct:   33 FKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGN 158          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   70 FADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTIS 456
            F   +++R+ MSR +  P+S+SR++R +K  G+E++ AV+VGTVTDD R+ E+P +KV+AL+ T   R RILK   +++    LAL AP    ++LL   ++ R+  ++F +  S+  PHT    KP  +S
Sbjct:   42 FNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSI--PHT----KPYVLS 165          
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   43 FIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALR 249
            F+ RR +S F   ++KR+ MSR N  P+SLSR+ R +K  G+E K AV+VGT+TDD R  EVP +KV ALR
Sbjct:   34 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of CX301564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_DICDI2.639e-2844.2260S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_TRYCR1.003e-2753.1360S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_ANOGA2.918e-2743.5760S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18_AEDAE8.489e-2747.8660S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_THEPA1.109e-2648.4160S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_LEIMA4.213e-2650.0060S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_THEAN1.226e-2546.8360S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_SALSA7.964e-1738.9360S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG6.976e-1353.5260S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionC08011B06SK PhyRootSw1 Citrus sinensis cDNA clone C08011B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301564 ID=CX301564; Name=CX301564; organism=Citrus sinensis; type=EST; length=609bp
CTTTTCCTTCTTCTCCATGATGCCTTTTTTTATTATTTCAGCTTCATTGG
ACGTCGTGCTGATTCCAAGTTCGCTGACACCATTGTCAAGAGAGTCAGAA
TGTCCAGAATTAACAACGCTCCTATCTCCCTCTCTAGATTAGTTAGATAC
GTCAAGGGCAAGGAAGACAAGATCGCCGTCATTGTTGGAACTGTCACTGA
TGATCCAAGATTACTTGAGGTCCCAGCCGTCAAGGTTGCCGCCTTAAGAT
TCACTGAAACTGCCCGCGCCAGAATCCTCAAGGCTGGTGGTGAAGTCTTG
ACCCTTGATCAATTAGCCTTAAGAGCTCCTAAGGGTTCTAACACTATCTT
ACTCCGTGGCCGCAAGAGCGTTCGTGAATCCATCAAGTACTTTGGTCACA
GAACTTCTGTCAACAACCCACACACTCACGATGGTGTCAAGCCAAGAACC
ATCTCCAAGGGACGCAAGTTCGAGCGTGCTCGTGGTCGCAGAAGATCCAA
TGGTTTCAAGGTGTAAATTTGATGGTTTACTATCATCAAGTTTATATCGT
TGAAGCACCAATAATAAAAGATGTAAAAACAACCTACGATACCCTCATCT
ACCCACAAT
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