CX301564
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.349e-40 Identity = 90/159 (56.60%), Postives = 112/159 (70.44%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513 + F+ RR +SKF I+KR+ MS++N AP+SLSRLV ++ GKEDKIAV+VGT+TDD R+ E+PA+KV ALRFTE ARARI KAGGE LT DQLALRAP G NT+LLRG K+ RE++K+FG V PH+H KP + S GFKV Sbjct: 33 YRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGV--PHSHS--KPYVRAKGRKFEKARGKRKSRGFKV 187
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39 Identity = 86/159 (54.09%), Postives = 108/159 (67.92%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513 + F+ RR++S F I+KR+ MS++N AP+SLSRLV ++ GK+DKIAV+VGT+TDD R+ E+PA+KV ALRFTE ARARI KAGGE LT DQLALRAP G NT+LLRG K+ RE++K+FG V H KP S GFKV Sbjct: 33 YRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGV----PHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 6.928e-37 Identity = 88/158 (55.70%), Postives = 108/158 (68.35%), Query Frame = 1 Query: 43 FIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGS-NTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513 ++ RR +SKF I+KR+ MS++N AP+SLSRLVRY+ GK+ KIAVIVGTVTDD R+ +VPA+ V ALRFTE+ARARI KAGGE LT DQLAL P S NT+LLRG K+ RE++K+FG V PH+H KP S GFKV Sbjct: 35 YLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGV--PHSH--TKPYVRQTGKKIEIARGRRRSRGFKV 188
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36 Identity = 83/159 (52.20%), Postives = 108/159 (67.92%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPRTISXXXXXXXXXXXXXSNGFKV 513 + F+ RR DS F I+KR+ MS++N P+SLSRL++Y++GKE KI V+VG VTDD R+ +VP +KV AL+FTETARARI KAGGE LT DQLALR P ++T+LLRG K+ RE++K+FG V PH+H KP S S GF+V Sbjct: 30 YRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGV--PHSH--TKPYVRSKGRKFEKARGRRKSRGFRV 183
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.218e-34 Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGK----EDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429 + F+ RR DS+F I+KR+ S+ N PIS+S++ K E K VIVGTVTDD RLL VP + VAALRFT++ARARILKAGGEVLTLDQLALRAP GSNT+LLRG+K RE+ ++FG PH H Sbjct: 32 YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGF-----GPHKH 161
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.724e-33 Identity = 73/135 (54.07%), Postives = 96/135 (71.11%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKGK----EDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429 + F+ RR DS+F I+KR+ S+ N PIS+S++ K ++K V+VGTVTDD R+L VP + +AALRFT++ARARILKAGGEVLTLDQLALRAP GSNT+L+RG+K RE+ ++FG PH H Sbjct: 32 YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGF-----GPHKH 161
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33 Identity = 72/133 (54.14%), Postives = 100/133 (75.19%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTH 429 + ++ RR +KF I+KR+ MS+I PISLS++VR++K G+E AVIVGTVTDD R+ E+P + + ALR T+TARA ILKAGGEV+T DQLALR+P GS T+LL+G+++ RE++K+FG V PH+H Sbjct: 32 YRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGV--PHSH 162
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33 Identity = 74/147 (50.34%), Postives = 102/147 (69.39%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKG--KEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHT--------HDGVKPR 447 + ++ RR +SKF I++R+ MSRIN P+SLSRL R++K +E IAV+VGT+T+D RL +VP + VAAL TE ARARIL AGGE+LT DQLALRAP G+ T+LL+GR++ RE++++FG HT H+ +PR Sbjct: 32 YRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHERARPR 178
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33 Identity = 68/139 (48.92%), Postives = 103/139 (74.10%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVKG--KEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447 + F+ RR +SKF I+KR+ MS+IN P+++S++VR++K +E ++AVIVGT+ DDPR+ +P + V ALR T+ AR+RILKAGGE++T DQLALRAP G NT+L++G+++ RE+ K+FG V + HT V+ + Sbjct: 32 YRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSK 170
BLAST of CX301564 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32 Identity = 71/139 (51.08%), Postives = 103/139 (74.10%), Query Frame = 1 Query: 37 FSFIGRRADSKFADTIVKRVRMSRINNAPISLSRLVRYVK--GKEDKIAVIVGTVTDDPRLLEVPAVKVAALRFTETARARILKAGGEVLTLDQLALRAPKGSNTILLRGRKSVRESIKYFGHRTSVNNPHTHDGVKPR 447 + F+ RR+ +KF ++KR+ MSRIN ISL+R+ R++K G+E+ IAV+VGTVTDD RL +VP +++ ALR TE ARARILKAGGE+LT DQLA++APKG T+L++G ++ RE+ ++FG V + HT V+ + Sbjct: 32 YRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSK 170 The following BLAST results are available for this feature:
BLAST of CX301564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301564 ID=CX301564; Name=CX301564; organism=Citrus sinensis; type=EST; length=609bpback to top |