CX301561

Overview
NameCX301561
Unique NameCX301561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 63/160 (39.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            D +D K+ T++LRG ++ +++E+ER ++D++ V R  +++ K++PGGGA E  +S  L++ + S+ G E+   EA A A + IPRTLA+N G++ I ++  L+ +H  GE A  G+D  TG + DM+E  + +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  363 DVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRHDGGEFA-AGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIA 521          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 66/159 (41.51%), Postives = 101/159 (63.52%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            CKDPKA T+L+RG ++ +++E ER ++DA+ V    +++ K+V GGGA E+ V+  L+  +  +EG E+   EA A A E IPRTLA+N G++ I  +  L+ KH +G+    GID   G + DM E  + +   VK Q   +A EAA M+LRIDD+++
Sbjct:  368 CKDPKAVTILIRGGTEHVVDEAERAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKHEDGQ-VTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVIA 525          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 557
            CK+PKA ++L+RG +  +++EVER L DA+ V     ++ K + GGGA E  ++  L + ++S+ G E+   EA A A E IPRTLA+N G++ I T+  L+ +H  G  + +G+D +   + DMK   + D   VK    ++A+E A M+LRIDD+++   KK  P SGQ
Sbjct:  363 CKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRIS-VGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIA--SKKSTPPSGQ 530          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   48 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 539
            K+PK+ T+LLRG  + L++E ER+L DA+SV  + I + K+V GGGA E  V+  L + +S + G  +   EA A A EA+P+ LA N G + I  +  L+  H   EN W G+D +TG I DM    + +   VK    K A E A ++LRIDD+++  K+++
Sbjct:  374 KNPKSVTILLRGGFERLVDEAERSLHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEYASKLPGKTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKLRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVIAARKEEE 537          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 62/160 (38.75%), Postives = 105/160 (65.62%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            +C+DPKA +++LRG++K +  E+ER L+DA+ V  + +++ ++V GGGA E+ ++  L++ + +I G E+    A A A E +P+TLA+N G++ I  +  L+  H   E+ ++GID   G I DMKE  + +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  358 ECRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAHE--ESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIA 515          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 67/159 (42.14%), Postives = 100/159 (62.89%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGV-NVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 518
            C  PKAC+V++RG +KD+L+E+ERN  DA+ VA++I  +PKL PGGGA E+ ++  L Q +   E +E   +   A A   IP  L +N GV N +  +T L+ KH  G  ++ G++G TG I D ++  + + Y VK+Q  K+A+EA   LLRID I+
Sbjct:  361 CAHPKACSVVIRGPTKDILDELERNFMDAVKVAKSIFISPKLCPGGGAAEMAMAHELMQSAGDNE-VEAEVFSRMASALTIIPSILLENSGVFNPLEAITLLEQKHKEG--SFYGVNGTTGEIVDTRD-LVLEPYAVKSQCIKSAVEAVSQLLRIDGII 515          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 66/175 (37.71%), Postives = 107/175 (61.14%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 569
            CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ +S  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  366 CKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 62/162 (38.27%), Postives = 102/162 (62.96%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 530
            CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++P GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ + T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K
Sbjct:  366 CKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKE-KGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 65/175 (37.14%), Postives = 107/175 (61.14%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 569
            CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  366 CKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 65/176 (36.93%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 572
            CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++  L + +  + G E    E  A A + IP+TLA+N G++ +  +  +  +H N     IGID   G  +DM E  I +   VK Q  K+A EAA M+LRIDD+++   K   P  GQ    P
Sbjct:  366 CKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA--KATKPEGGQGGGMP 538          
The following BLAST results are available for this feature:
BLAST of CX301561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
THS1_HALVO2.657e-2839.38Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS_METKA3.470e-2841.51Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSA_THEAC5.919e-2839.18Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSB_AERPE7.731e-2839.63Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THSA_METTH5.011e-2738.75Thermosome subunit alpha OS=Methanobacterium therm... [more]
TCPG_ENCCU5.011e-2742.14T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
THSB_THEK16.545e-2737.71Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THS_DESSY1.458e-2638.27Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_PYRKO1.458e-2637.14Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_THEK11.904e-2636.93Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC08011B03SK PhyRootSw1 Citrus sinensis cDNA clone C08011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301561 ID=CX301561; Name=CX301561; organism=Citrus sinensis; type=EST; length=708bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTTGATTGCAAA
GATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCT
GAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACA
TAATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACA
GTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAA
GTGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTT
TGGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAA
GGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACAC
TGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATG
TGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTG
AGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTC
AGGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATA
GTGAGCANATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAG
TTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATG
ATTTTGCT
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