CX301561

Overview
NameCX301561
Unique NameCX301561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   45 CKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  379 CTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   45 CKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  379 CTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 53/157 (33.76%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            C + KA T+ +RG +K +++E +R L DA+ V RN++++ ++V GGG+ EL  +  + +++  I+GIE++ + A A A E+IP  LA+N G+  I  ++ L+ K      + +GID      +DMKE K+ +    K +    A +   M+L+IDD+
Sbjct:  376 CPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   45 CKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  379 CASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   45 CKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  379 CASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 61/184 (33.15%), Postives = 103/184 (55.98%), Query Frame = 3
Query:   48 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 599
            K+PK+ ++L+RG  + +++E ER L+DA+    ++I++ + V GGGA E+ ++  L++ +  + G E+   EA A A E +   LA+N G++ I  +  L+  H N  N W G++  TG   DM +  + +   VK    K A EA  ++LRIDDIV+  KK    G  +   K + E ++  D
Sbjct:  373 KNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIVAAGKK----GGSEPGGKKEKEEKSSED 552          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 58/175 (33.14%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   45 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG--IKKKQAPGSGQAP 563
            C   K CT++LRG +   + EVER+L DA+ + ++ +KN  +V GGGA E+ +S  L+  S +I G ++    A A + E IPR L  N G +    +  L+ +HA GE  W G+D ++  +++  E  +W+   VK+    +A EAA ++L +D+ +     ++ QAP     P
Sbjct:  369 CPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGE-MWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQQPQAPQGALPP 542          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 58/170 (34.12%), Postives = 96/170 (56.47%), Query Frame = 3
Query:   27 FGTRVD-------CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            FGT  D       CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E + +  + Q++     +E++   A A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DMK+  + +    K Q    A +   M+L+IDDI
Sbjct:  364 FGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 55/172 (31.98%), Postives = 98/172 (56.98%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 557
            DC +  A T+ +RG +K ++ E +R++ DA+ V RN+I++ +++ GGG++E++    +   +  I  IE++   A A A +AIP  LA+N G+  I +++ ++      +N  +GID N    +DMK   ++D    K Q F  A +   M+L+IDDI+     K  PG+ +
Sbjct:  372 DCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII-----KMGPGADE 538          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 58/172 (33.72%), Postives = 101/172 (58.72%), Query Frame = 3
Query:   24 EFGTRVD-------CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 518
            EFGT  D        K+ K  T  +RG++K +++E ER L D++ V RN++K+ ++V GGGA E+T+S  + +++    GI+++ +   A A + IP TLA+N G++ I T++ L+ K    + + IG+D      +DMKE  + D +  K Q    A +   M+L+ID+++
Sbjct:  384 EFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555          
The following BLAST results are available for this feature:
BLAST of CX301561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TCPD_RAT7.488e-2336.88T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE7.488e-2336.88T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPE_CAEEL9.780e-2333.76T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPD_PONAB9.780e-2336.88T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN9.780e-2336.88T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THSB_SULSH1.277e-2233.15Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPH_SCHPO1.668e-2233.14Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPE_PONAB1.668e-2234.12T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_DICDI1.668e-2231.98T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_YEAST2.845e-2233.72T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC08011B03SK PhyRootSw1 Citrus sinensis cDNA clone C08011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301561 ID=CX301561; Name=CX301561; organism=Citrus sinensis; type=EST; length=708bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTTGATTGCAAA
GATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCT
GAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACA
TAATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACA
GTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAA
GTGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTT
TGGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAA
GGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACAC
TGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATG
TGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTG
AGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTC
AGGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATA
GTGAGCANATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAG
TTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATG
ATTTTGCT
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