CX301561

Overview
NameCX301561
Unique NameCX301561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 55/163 (33.74%), Postives = 93/163 (57.06%), Query Frame = 3
Query:   57 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 545
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+ + V GGG +E+ ++  + Q ++   G E    E+ A A   +P  +A N G +    +  L+  H+ G N   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 55/163 (33.74%), Postives = 93/163 (57.06%), Query Frame = 3
Query:   57 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 545
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+ + V GGG +E+ ++  + Q ++   G E    E+ A A   +P  +A N G +    +  L+  H+ G N   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   45 CKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            C  P K  ++++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +   A + A E IP TLA+N G+N I T+T L+ +HA G+    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  376 CASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHAQGDK-MAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVN 534          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 57/150 (38.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   66 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            +V++RGA+  +L+E ER+L DA+ V R ++K   L+ GGGA E+ +S  L+++S S+EG+E + ++  A A E IP TLA+N G+N I+ +T L+ +H NG+    GI       ++  E  I     V       A E    +LRIDDI
Sbjct:  377 SVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITELRSRHENGD-VNEGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 525          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 53/157 (33.76%), Postives = 97/157 (61.78%), Query Frame = 3
Query:   51 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 521
            D    T+LLRG++  +++E+ER +QDA+ V  + + + +++ GGGA E+ +++ L+  + S+ G E+   EA A A E +PR LA+N G++ I T+  L+  H +G+    G++  TG + D  +  + +  + K Q   +A EAA ++L+IDDI++
Sbjct:  369 DVHGVTLLLRGSTDHVVDELERGVQDALDVVASTVADGRVLAGGGAIEVELASRLRNYADSVSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAHEDGQ-VRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDIIA 524          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = 3
Query:   57 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISD-MKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 545
            KA TV+++G++  + +E ER+L DA +  RN++  P +V GGGA E  ++  L+  +  + G E+  + A A A E     L++  G++ I  +T ++ KHA G +NA  GID     I D M E ++ D+  VK Q  K+A EAA  +L+IDD+++    KQ P
Sbjct:  363 KAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA--GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIAAAPAKQQP 525          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 56/150 (37.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   66 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            +V++RGA+  +++E ER+L DA+ V R ++K   L+ GGGA E+ +S  L +++ S+EG++ + ++  A A E IP TLA+N G+N I+ +T L+ KH NGE    GI       ++  E  I     V       A E    +LRIDDI
Sbjct:  376 SVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGE-LNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 54/148 (36.49%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   72 LLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            ++RGA+  +L+E ER+L DA+ V R ++K   L+ GGGA E+ VS T+ ++S +++G+E + ++  A A E IP TLA+N G+N I+ +T L+ +H +GE    GI       ++  +  I     V       A E    +LRIDDI
Sbjct:  379 IVRGANNVVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEFAEALEVIPTTLAENAGLNSIKVVTELRSRHESGETN-AGISVRRSGTTNTYDEHILQPVLVSTSAITLAAECVKSILRIDDI 525          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   57 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 515
            K  ++L RGA+   L E ER+L DA+ V R ++K   L+ GGG+ E+  +  L + +  +EG E     A + A E IP TLA+N G+N I+ +T L+ +HANGE    GI+   G ++++ E  +     V     + A E   M+++IDDI
Sbjct:  372 KTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKT-AGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523          
BLAST of CX301561 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   42 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAP 563
            +C   K+ T++LRG +K  + EVER++ DA+ +    I N ++VPG G+ E+ +S  L+  S SI   E+    + A A E+IPR L+ N G +    +  L+ KH+    + W G+D   G I +  +  I++   +K     +A EAAC++L ID+ +       A G+ ++P
Sbjct:  365 ECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIK--NPSSAAGTQRSP 537          
The following BLAST results are available for this feature:
BLAST of CX301561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TCPB_MACFA2.409e-2133.74T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN2.409e-2133.74T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPD_TAKRU3.146e-2135.00T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_CANGA3.146e-2138.00T-complex protein 1 subunit delta OS=Candida glabr... [more]
THS2_HALVO4.109e-2133.76Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSG_SULSO7.008e-2136.36Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPD_YEAST1.195e-2037.33T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPD_ASHGO3.478e-2036.49T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPD_SCHPO4.543e-2035.95T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPH_PLAF75.933e-2032.00T-complex protein 1 subunit eta OS=Plasmodium falc... [more]

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Properties
Property NameValue
Genbank descriptionC08011B03SK PhyRootSw1 Citrus sinensis cDNA clone C08011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301561 ID=CX301561; Name=CX301561; organism=Citrus sinensis; type=EST; length=708bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGTTGATTGCAAA
GATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCT
GAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACA
TAATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACA
GTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAA
GTGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTT
TGGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAA
GGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACAC
TGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATG
TGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTG
AGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTC
AGGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATA
GTGAGCANATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAG
TTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATG
ATTTTGCT
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