GO241473

Overview
NameGO241473
Unique NameGO241473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.041e-30
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            D Y +KAPS F VR+VGKT+V RT G K A++ LK  +FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V  +  D    ++    A+ FTKR   QVK
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDD---YLVRLFAIAFTKRRSFQVK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 68/100 (68.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYDIKAPS F  R VGKTLV RTQGTKIASEGLK  V EVSL DL +  + E ++RK RL  EDVQ ++VL NF GM+ TTDKLRS+V+KW TLIEA+V
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKWQTLIEAHV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK  VFEVSL DL N  + E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  V
Sbjct:   29 DWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 68/100 (68.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAPS F  R VG TLV RTQGTKIASEGLK  VFEVSL DL    + E ++RK RL AEDVQG+NVL NF GM+ TTDKLR +V+KW TLIEA +
Sbjct:   29 DWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 67/125 (53.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK  V EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V  +     ++    A+ FTKR  NQ++
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTS-DDYVLRIFAIAFTKRQANQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 67/125 (53.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQDH**LHIXGCSALGFTKRLPNQVK 591
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK  V EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V  +     ++    A+ FTKR  NQ++
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTS-DDYVLRIFAIAFTKRQANQIR 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.482e-30
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAPS F  R VG TLV RTQGTKIASEGLK  VFEVSL DL    + E ++RK RL AEDVQG+NVL NF GM+ TTDKLR +V+KW TL+EA +
Sbjct:   29 DWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLVEANI 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.482e-30
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAP+ F+ R VGKTLV RTQGTKIAS+GLK  VFEVSL DL NE   E ++RK +L AE V G++VLTNF GM  TTDKLRS+V+KW TLIE  V
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSV 128          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.548e-30
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVGCQ--DH**LHIXGCSALGFTKRLPNQVK 591
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK  V EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G +FT+DK+RSLVRKW +L+EA V  +  D    ++     + FT+R  NQ+K
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADD---YVLRIFCIAFTRRHQNQIK 151          
BLAST of GO241473 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.548e-30
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  217 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHGVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 510
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK  VFEVSL DL N  + E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  V
Sbjct:   29 DWYDVKAPNMFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSV 128          
The following BLAST results are available for this feature:
BLAST of GO241473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_COCIM2.041e-3056.6940S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A_LYSTE2.666e-3068.0040S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_CULQU2.666e-3066.0040S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_BOMMA2.666e-3068.0040S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A2_DEBHA2.666e-3053.6040S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA2.666e-3053.6040S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_SPOFR3.482e-3067.0040S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_ANOGA3.482e-3067.0040S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_PICPG4.548e-3051.9740S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_AEDAE4.548e-3066.0040S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]

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Properties
Property NameValue
Genbank description121 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 212 5, mRNA sequence.