DT214569

Overview
NameDT214569
Unique NameDT214569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:4..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480
            +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SFI  KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 38/111 (34.23%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480
            +KFET SYLPPL+D+ + +++ Y + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + F+  KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  160 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 477
            KFETLSYLP L+ + + +++ Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  148 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 480
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q  + +  +P
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = -2
Query:  181 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 480
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = -2
Query:  145 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 480
            +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  175 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 480
            +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  145 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 336
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  148 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 477
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H+ P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SF+A +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of DT214569 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = -2
Query:  163 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 471
            ET S+LP  + + +  +I Y+I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
The following BLAST results are available for this feature:
BLAST of DT214569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_ANASP2.374e-1938.74Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA2.625e-1834.23Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_THIFE4.477e-1841.51Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY1.440e-1636.04Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI5.473e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS7.148e-1637.50Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA3.547e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS2_ACECL6.051e-1551.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS2_CHRVI7.903e-1535.45Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_HYDMR1.032e-1436.89Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_24A08_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-24A08-A16-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214569 ID=DT214569; Name=DT214569; organism=Citrus sinensis; type=EST; length=730bp
TGAGCAGCAGCAACAGCAGCCTAAGTAAAATTAAACGCAAACCGAACCCC
CATTGATCGAACGTTCATGATGGGGGTTACACATAATAATAATCAACAAT
ATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGG
CTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATC
CGATAATTCGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACC
TCCTTCAAAACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCA
CATTGTCCAGTAGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCAC
GGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCG
GAGCGGATAAGGTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGG
CGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACA
CCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGTAATGTCA
TTGTTGGTCTTCTTGGTTGCTGGGAAAGCAGAAGAAGACTTGAGGCCGGT
GAAGGGGGCGACCATGCTGGCCTGAGCAAGGCTGGCGCGGTTCGCGGTGG
CAACGGTGGCCGATGAGATCATTGAGGAAGCCATTGGTACTTGCTCCTTC
AAAAGCTATAATAATAAATTTTAAAAAAAA
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