DT214566

Overview
NameDT214566
Unique NameDT214566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.021e-54
Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = -2
Query:  261 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 620
            RYLT SA+FRGK++ KEV++QM NVQNKNSSYFVEWIPNN+++ +C IPP  LKM+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  309 RYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPPRDLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.021e-54
Identity = 100/121 (82.64%), Postives = 113/121 (93.39%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLTASA FRGKMSTKEVDEQM  VQ KNSS+FVEWIPNN+KS+VCDIPP G+KM++TFIGN+T IQE+F+R+  QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A+
Sbjct:  309 RYLTASATFRGKMSTKEVDEQMHAVQTKNSSFFVEWIPNNIKSSVCDIPPKGMKMSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAS 429          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.021e-54
Identity = 98/120 (81.67%), Postives = 113/120 (94.17%), Query Frame = -2
Query:  261 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 620
            RYLT SA+FRGK++ K+V++QM NVQNKNSSYFVEWIPNNV++ +C IPP GLKM+STF+GN+T+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  309 RYLTCSAIFRGKVAMKDVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPRGLKMSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB1_EMENI (Tubulin beta-1 chain OS=Emericella nidulans GN=benA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.021e-54
Identity = 98/121 (80.99%), Postives = 113/121 (93.39%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLT SA+FRGK+S KEV++QM N+Q+KN SYFVEWIPNN+++ +C IPP GLKM+STFIGNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNIQSKNQSYFVEWIPNNIQTALCSIPPRGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAS 429          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.333e-54
Identity = 97/121 (80.17%), Postives = 113/121 (93.39%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLT SA FRGK+S KEV++QM NVQNKNSSYFVEWIPNNV++ +C +PP GLKM++TF+GNSTSIQE+F+R+ +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A+
Sbjct:  309 RYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSVPPRGLKMSATFVGNSTSIQELFKRIGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAS 429          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.333e-54
Identity = 99/120 (82.50%), Postives = 113/120 (94.17%), Query Frame = -2
Query:  261 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 620
            RYLT SA+FRGK++ KEV++QM NVQ+KNSSYFVEWIPNN+++ +C IPP GLKM+STFIGNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  309 RYLTCSAIFRGKVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPPRGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.741e-54
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLT SA+FRGK+S KEV++QM NVQNKNSSYFVEWIP NV++ +C IPP GLKM+STF+GNSTSIQE+F+R+ +QFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPTNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRIGDQFTRMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAS 429          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.741e-54
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = -2
Query:  261 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 620
            RYLT SA+FRG+++ KEV++QM NVQNKNSSYFVEWIPNN+++ +C IPP GL M+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  309 RYLTCSAIFRGRVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPPRGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.274e-54
Identity = 97/121 (80.17%), Postives = 113/121 (93.39%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLT SA+FRGK+S KEV++QM N+Q+KN +YFVEWIPNN+++ +C IPP GLKM+STFIGNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPPRGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAS 429          
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_ASPOR (Tubulin beta chain OS=Aspergillus oryzae GN=benA56 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.274e-54
Identity = 97/121 (80.17%), Postives = 113/121 (93.39%), Query Frame = -2
Query:  258 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 620
            RYLT SA+FRGK+S KEV++QM N+Q+KN +YFVEWIPNN+++ +C IPP GLKM+STFIGNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+
Sbjct:  309 RYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPPRGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAS 429          
The following BLAST results are available for this feature:
BLAST of DT214566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB_ACRCO1.021e-5483.33Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB2_PHYPO1.021e-5482.64Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB2_COLGL1.021e-5481.67Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB1_EMENI1.021e-5480.99Tubulin beta-1 chain OS=Emericella nidulans GN=ben... [more]
TBB_PHANO1.333e-5480.17Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]
TBB_CEPAC1.333e-5482.50Tubulin beta chain OS=Cephalosporium acremonium GN... [more]
TBB_RHYSE1.741e-5480.99Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]
TBB_GIBFU1.741e-5482.50Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_ASPPA2.274e-5480.17Tubulin beta chain OS=Aspergillus parasiticus GN=b... [more]
TBB_ASPOR2.274e-5480.17Tubulin beta chain OS=Aspergillus oryzae GN=benA56... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22C01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-22C01-E2-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214566 ID=DT214566; Name=DT214566; organism=Citrus sinensis; type=EST; length=861bp
GATTCCAAAGCAAATTGAAGTATCATATTTAAACATACAAGGTTCCAAGA
AAATTAAACAATAAGGGGAAAAGGACGAAAAGATGAAGAAACTATTTCAA
TTAGGCTTCTCCGCTTCTATCTAGATCATGACAAGAAACCAGCAACTGGA
AGTTGAGGTTCCAAAGAATTGCTTCAGAAGCAATCCACCCATCAAAATTA
TTGCTGATAGTCTTCATCAAACTGTTCCTCTTCATCATCATATCCTTCCT
CATCAGCTGTTGCATCTTGGTATTGCTGATACTCTGAAACCAAATCATTC
ATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCTTCCCCAGT
ATACCAATGTAAGAAAGCTTTTCTCCTAAACATGGCAGTAAATTGTTCAC
TCACACGCCTGAACATTTCCTGGATAGATGTGGAGTTCCCAATGAACGTG
GAGGCCATCTTCAAACCAGTGGGTGGGATATCACAAACGGTAGACTTCAC
ATTGTTGGGGATCCACTCAACAAAGTATGAGGAGTTCTTGTTCTGAACAT
TCAGCATTTGCTCATCTACTTCCTTGGTGCTCATCTTACCACGGAACATG
GCTGATGCTGTTAGATAGCGGCGTGAGTTTTGAACCTCAGATATTCAATT
TATTCTCTTGAAAAGTAAAAATAAAGATTGAACTCAAATGCACTGAAGCT
CTGATATTTACATAATTATAAACACGAATGTCAATATGTATGCCAGCAGA
CCAACAGACCTTGATAATCTCCTCTCCCCTGCGCCTGCGGTAGTATCTGT
TTTGATCATGATCCTGAATAGGCAATCCCCTGTGGATGGATTTGTGGTGG
TAACAGCCGAA
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