DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACC4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain B4264) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGTWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain G9842) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGTWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPI---VLPDNYIEHASPTQQLALAGLT 589
            IG  +V   GKD  +L +G  ++  L+A   L K G+ V V +ARF KP+D ++++ +      ++T+EE  L GGFGS +     L+   D G+   PI    +PD +IEH S T  L   GLT
Sbjct:  492 IGTWEVLRPGKDAVILTFGTTIEMALEAAEELQKEGLSVRVVNARFIKPIDKQMMKAILNEGLPILTIEEAVLEGGFGSTI-----LEYAHDLGMYHTPIDRMGIPDRFIEHGSVTALLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_THETN (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermoanaerobacter tengcongensis GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  200 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATAL 589
            +GKG+V +EG+ +A+   G MV   + A  +L   GI+  V + RF KPLD +L+ E+      ++TVE+  + GG GS      A+  LL+    +RP++    PD +IEH          GL    IA T L
Sbjct:  486 LGKGEVLLEGEKIAVFALGRMVSKSIDAAEILKGHGINPFVVNLRFVKPLDEELILEISNKVDLVVTVEDNVIAGGVGS------AILELLNDKKVYRPVLRLGFPDKFIEHGDVESLFKKYGLDSQSIADTIL 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NITOC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  260 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHAS 589
            +GK ++  +G+ +A+L +GA V   L+A   L     D TV + RF KPLD  LV E+  NH  L+TVE+  + GG GS VS  +A  G+    V      LPDN++EH S
Sbjct:  496 LGKAELKRKGRGIAILAFGATVAPALEAAEKL-----DATVVNMRFVKPLDEDLVLEMAMNHELLVTVEDNVIAGGAGSAVSECLAYHGV---SVPLLLHGLPDNFLEHGS 598          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAEIG (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain PittGG) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGK ++  EG+ +A+L +G ++ + L+   L  KL  + TV D RF KP+DI+++  L Q H +L+T+EE ++ GG GS V+  +   G          + LPD +I  A+  + LA  GL    I    L+ + +
Sbjct:  494 IGKSRLIREGQKIAILNFGTLLPSALE---LSEKL--NATVVDMRFVKPIDIEMINMLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSG---KSTALLQLGLPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_FRAP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  179 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 592
            ++GK K+  +G  VA+L +G ++     A  L  K  I  TV D RF KPLD +++ ++CQNH  + T+EE S+ GG GS V+ +I  +  L   +  R   L D ++ H +    L  + L+ + IA     LL   +
Sbjct:  486 KLGKAKLVKKGSRVAILNFGTLLP---LANQLADKYHI--TVVDMRFVKPLDEQMINQICQNHNIVFTLEESSIAGGAGSAVNEYIFAND-LSKNITVRNFGLKDEFLTHGTKDLLLDYSNLSFNKIAEVLEKLLSHKK 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_AZOPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG+   EGK++A++  G +     KA  L+ KLGI V   D  + KP+D +L+ E+ +N+  ++ +E+G++ GG G+ V  F+  +G      K + I +PD +I H +  +   L G+
Sbjct:  502 VGKGRKLKEGKEIAVVSIGTIGNLARKAIRLVEKLGISVAHYDMIYLKPIDEELLHEIGKNYRCVVVIEDGTIKGGLGTAVIEFMVQNGY---DPKIKQIGVPDEFIPHGTIAELYKLCGM 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 45/128 (35.16%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  212 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 592
            EIGK +   EG D  ++ YGAM++  + A   L    +++ V +ARF KP+D ++V +   +  F++T+EEG+ +GGFGS      A+D  LD+    R + LPD ++ H   +Q L  + L+   IA
Sbjct:  495 EIGKAEWIREGTDGTIVAYGAMLEQAIAAAEQLEG-ELEIGVVNARFVKPIDAEMVHKTLSDGRFVVTLEEGTRVGGFGSAFLE-SAVDQRLDTRAVHR-LALPDEFVLHGDRSQLLDQSTLSAQKIA 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_METCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylococcus capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  173 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 589
            +GKG+V + GK  A+L +G  +     A AL     I  TVA+ RF KPLD  L+ EL   H  ++TVEE ++ GG GS V  F+A       G+    I L D +++  +  + LA+AGL    IA +  + +  T  A
Sbjct:  494 VGKGEVRLRGKGTAILAFGTPL-----AAALAVGERIGATVANMRFVKPLDEALILELAATHDRIVTVEENAIAGGAGSAVGEFLAAQ---HCGIPVCHIGLKDEFLDQGTREELLAIAGLDQAGIARSIDAFIQATAAA 625          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BACC46.116e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACC26.116e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACA26.116e-1236.801-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_THETN7.988e-1234.331-deoxy-D-xylulose-5-phosphate synthase OS=Thermoa... [more]
DXS_NITOC7.988e-1240.541-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_HAEIG7.988e-1233.091-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_FRAP27.988e-1233.091-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_AZOPC7.988e-1232.231-deoxy-D-xylulose-5-phosphate synthase OS=Azobact... [more]
DXS_RHOBA1.043e-1135.161-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopi... [more]
DXS_METCA1.043e-1135.711-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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