CN189618

Overview
NameCN189618
Unique NameCN189618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:57..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.243e-79
Identity = 143/159 (89.94%), Postives = 150/159 (94.34%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSDEEH FESKADAGASKT+PQQAGTIRK G+IVIKNR CKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD+ LL+QIKDGF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.243e-79
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD++LLSQIKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.770e-79
Identity = 141/159 (88.68%), Postives = 149/159 (93.71%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFN KKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+K GF EGKDLV++VMS+MGEEQICA+KDIG K
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.770e-79
Identity = 141/160 (88.12%), Postives = 151/160 (94.38%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 498
            MSDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+K GF EGKDLV++VMS+MGEEQICA+KDIG K+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.170e-79
Identity = 143/161 (88.82%), Postives = 152/161 (94.41%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDI-VPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 498
            MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF  KKLE++ VPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD++LL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIG KN
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.052e-78
Identity = 141/160 (88.12%), Postives = 150/160 (93.75%), Query Frame = 1
Query:   19 MSD-EEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSD EEHHFESKADAGASKT+PQQAGT+RKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV RT+YQLIDISEDGFVSLLT  GNTKDDLRLPTDE L++QIK+GF  GKDLVVTV S+MGEEQICALKD+GPK
Sbjct:    1 MSDSEEHHFESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.204e-74
Identity = 136/159 (85.53%), Postives = 146/159 (91.82%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV RTDYQLIDISEDG+VSLLT+ G+TKDDL+LP D+ LL QIK GF +GKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.607e-73
Identity = 130/159 (81.76%), Postives = 146/159 (91.82%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 495
            MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV R DYQLIDISEDGFVSLLT+ G+TKDDL+LPTDE LL+Q+K+GF EGKD+VV+VMS+MGEEQ+CALK++GPK
Sbjct:    1 MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.922e-72
Identity = 125/156 (80.13%), Postives = 145/156 (92.95%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDI 486
            MSD++HHFES ADAGASKT+PQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD PHV R DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GF  GKDL+++VM +MGEEQICA+KD+
Sbjct:    1 MSDDDHHFESSADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.289e-68
Identity = 122/157 (77.71%), Postives = 142/157 (90.45%), Query Frame = 1
Query:   19 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 489
            MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHFV IDIF  KKLEDIVPSSHNCD PHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q++ GF EGKD+VV+VMSSMGEEQICA+K++G
Sbjct:    1 MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CN189618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IF5A_SENVE1.243e-7989.94Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A4_SOLTU1.243e-7990.57Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A4_SOLLC2.770e-7988.68Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU2.770e-7988.13Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A1_MEDSA6.170e-7988.82Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A_MAIZE1.052e-7888.13Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_ARATH1.204e-7485.53Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A3_ARATH6.607e-7381.76Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A_DIACA1.922e-7280.13Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH1.289e-6877.71Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189618 ID=CN189618; Name=CN189618; organism=Citrus sinensis; type=EST; length=746bp
GACCATAAAGAAAAAACTATGTCGGACGAGGAGCACCACTTCGAATCGAA
GGCTGATGCCGGTGCATCGAAGACTTTCCCTCAGCAAGCTGGAACCATCC
GCAAGAATGGTTATATTGTCATCAAAAATCGTCCTTGCAAGGTTGTTGAA
GTTTCCACTTCAAAGACTGGCAAGCATGGACATGCCAAGTGCCACTTTGT
GGGAATTGATATATTTAATGGAAAGAAGCTTGAAGATATTGTGCCTTCCT
CCCACAATTGTGATGCTCCCCATGTTACTCGCACTGACTATCAGCTGATT
GATATATCCGAAGATGGTTTTGTGAGCCTTTTAACTGAAACCGGAAACAC
CAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTGCTTAGCCAGATTA
AAGATGGGTTTGCTGAAGGAAAAGACCTTGTGGTGACCGTTATGTCGTCA
ATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTA
ACTATAATCCCATGGCATTAGCTTTGGCTGATAGCAGGAGAACTCTTTCT
TATGTTGCCAACATGGAGACTATCTACTATCCATGTCCACAACAAACTTC
CATTAAGATAGTATTTTGGCTGTGTATTAAAATATCGTCGTGCTTGTGAT
AAAGGAAGTGGAAAGAAAGCAGGTGTCGTCAATCTCCTGTTGAACGAAAT
TTATGTTGACAGCATCTCGGACTTATATATATTTTACTATTTTATT
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