CN189618

Overview
NameCN189618
Unique NameCN189618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:57..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.215e-42
Identity = 84/142 (59.15%), Postives = 108/142 (76.06%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R DYQLI I +DG++SLLTETG  ++DL+LP  E L  +I+  +  G+D+ V+VM +M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.708e-42
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN D P++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F   +D+ ++V+S+M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.878e-42
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.258e-39
Identity = 84/159 (52.83%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   22 SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 498
            +  EH F+S  DAGAS T+P Q   +RK G++VIKNRPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN D P+V RTDYQ   I ED F+ L+   G  K D+++P  E L  +I+    EGKD  V V ++MGEE    +K+   K+
Sbjct:    8 AQHEHTFDS-VDAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNKD 163          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.643e-39
Identity = 78/142 (54.93%), Postives = 107/142 (75.35%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            DAGAS TFP Q   +RKNG++V+K  PCK+VE+S SKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G   +DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.622e-37
Identity = 74/126 (58.73%), Postives = 97/126 (76.98%), Query Frame = 1
Query:   55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLV 432
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +I+  +  G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CN189618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IF5A2_HUMAN1.215e-4259.15Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK2.708e-4257.75Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT7.878e-4256.34Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT2.292e-4156.34Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE2.292e-4156.34Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN2.292e-4156.34Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN2.292e-4156.34Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_NEUCR1.258e-3952.83Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5AL_HUMAN1.643e-3954.93Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A1_CHICK2.622e-3758.73Eukaryotic translation initiation factor 5A-1 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189618 ID=CN189618; Name=CN189618; organism=Citrus sinensis; type=EST; length=746bp
GACCATAAAGAAAAAACTATGTCGGACGAGGAGCACCACTTCGAATCGAA
GGCTGATGCCGGTGCATCGAAGACTTTCCCTCAGCAAGCTGGAACCATCC
GCAAGAATGGTTATATTGTCATCAAAAATCGTCCTTGCAAGGTTGTTGAA
GTTTCCACTTCAAAGACTGGCAAGCATGGACATGCCAAGTGCCACTTTGT
GGGAATTGATATATTTAATGGAAAGAAGCTTGAAGATATTGTGCCTTCCT
CCCACAATTGTGATGCTCCCCATGTTACTCGCACTGACTATCAGCTGATT
GATATATCCGAAGATGGTTTTGTGAGCCTTTTAACTGAAACCGGAAACAC
CAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTGCTTAGCCAGATTA
AAGATGGGTTTGCTGAAGGAAAAGACCTTGTGGTGACCGTTATGTCGTCA
ATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTA
ACTATAATCCCATGGCATTAGCTTTGGCTGATAGCAGGAGAACTCTTTCT
TATGTTGCCAACATGGAGACTATCTACTATCCATGTCCACAACAAACTTC
CATTAAGATAGTATTTTGGCTGTGTATTAAAATATCGTCGTGCTTGTGAT
AAAGGAAGTGGAAAGAAAGCAGGTGTCGTCAATCTCCTGTTGAACGAAAT
TTATGTTGACAGCATCTCGGACTTATATATATTTTACTATTTTATT
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