CN189618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.459e-36 Identity = 83/159 (52.20%), Postives = 111/159 (69.81%), Query Frame = 1 Query: 19 MSDEEH---HFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 480 MSD+ H HF + D+GA+ TFP+Q +RKN +++IK RPCK+VE+STSKTGKHGHAK H V IDIF KKLEDI PS+HN D P V R +Y L+ I +DG+ SL+ E+ KDDL+LP D L QI+D + + + ++V V+S++GEE I K Sbjct: 1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 8.436e-36 Identity = 72/145 (49.66%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 46 SKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480 ++A +GAS TFP Q +RKNG++VIK PCK+V++STSKTGKHGHAK + IDIF GKK E+I PS+HN D P+V+R +Y ++D+ +DG++SLL G K+DL LP D+ + +I EGK+ +V+V+S++G+E + ++K Sbjct: 13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33 Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 1 Query: 28 EEHHFESK---ADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 480 E+HH E + A++GA+ TFP+Q +RKN +++I+ RPCK+VE+STSKTGKHGHAK H V IDIF KKLEDI PS+HN D P V R +Y L+ I EDGF SL+ E+ KDDL++P + +L + I++ + + ++V V+++ GEE I K Sbjct: 3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.209e-15 Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 1 Query: 73 TFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480 T P++AG I+ +IVI PCKVVEV SKTGKHG AK VGI F+G K +VP+ + P + + Q++ D V L+ + ++ +P +E + S++ +G + V V MG +I ++ Sbjct: 3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG------VEVEVWEVMGRHKIMRVR 131
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13 Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 Query: 55 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVG 204 D GASKT P+Q +RK G++V+K+RPCK+VE+STSKTGKHG AK H VG Sbjct: 3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12 Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 91 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480 G +++ YIVI PC+VVEV+ +KTGKHG AK + + + IF G K + P + P + + Q+I D + ET T ++ +PT+E++ S+IK KD V MG ++I +K Sbjct: 9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_METKA (Translation initiation factor 5A OS=Methanopyrus kandleri GN=eif5a PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12 Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 1 Query: 97 IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKD 483 ++K YI+I + PCK+VE +TS GKHG AK V + +F+GKK P D P + R Q++ D + ET T +++ P DE L SQ++ G +V M + G+ +I +K+ Sbjct: 13 LKKGKYIMIDDEPCKIVEYTTSSPGKHGSAKARIVAVGLFDGKKRTLTKPVDAKVDVPVIERKTAQVVSDMGDTVQLMDMETYET-FEVQKPEDEELASQLEPG------TMVEYMEAAGKRKIVGIKE 134
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_CALMQ (Translation initiation factor 5A OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=eIF5A PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12 Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 88 AGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISED 315 AG I++ YI+I N PC+VVEV SKTGKHG AK VGI + +G K +VP+ + P + + Q+I IS D Sbjct: 8 AGDIKEGSYIMIDNMPCRVVEVEKSKTGKHGSAKARIVGIGVIDGVKRTIVVPTDAAVEVPVIEKFTAQVISISGD 83
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_KORCO (Translation initiation factor 5A OS=Korarchaeum cryptofilum (strain OPF8) GN=eIF5A PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11 Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 1 Query: 88 AGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQI 468 AG +RK Y+++ + PC+V+EVS SK GKHG AK IF+G + I P+ + P V + Q+I++ + + ET T +L LP D L S++K G + V SMG+ +I Sbjct: 8 AGDLRKGSYVILDDEPCEVLEVSKSKPGKHGSAKVRVEARGIFDGARRSKIFPADALVEIPIVDKKTAQVINVYGNVVQLMDLETYET-FELPLPEDPELASRLKSG------IEVEYWESMGKRKI 127
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11 Identity = 39/114 (34.21%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 67 SKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDG 408 SKT+ G ++ +I+I PCK+VE+S +KTGKHG AK H V I + +G K + P + P + + Q++ I+ D + ET +T ++ LP +E L S+++ G Sbjct: 2 SKTYAT-LGELKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDSVQLMDMETYDT-FEVPLPEEEELKSRLEPG 113 The following BLAST results are available for this feature:
BLAST of CN189618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189618 ID=CN189618; Name=CN189618; organism=Citrus sinensis; type=EST; length=746bpback to top |