CN189618

Overview
NameCN189618
Unique NameCN189618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:57..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_PYRHO (Translation initiation factor 5A OS=Pyrococcus horikoshii GN=eif5a PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 40/135 (29.63%), Postives = 66/135 (48.89%), Query Frame = 1
Query:   85 QAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 489
            Q   ++   YI+I + PC++V ++ S  GKHG AK     + IF+GK    + P+S   D P + +   Q+I I+ D    +  ET  T     +P D  +  +I+D   EG  + V    ++G  +I  +K  G
Sbjct:    8 QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYET---FEVPIDTGVADEIRDQLKEG--INVEYWETLGRIKIMRIKGEG 137          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 41/130 (31.54%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   91 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            G ++   Y++I   PC+VVE++ +KTGKHG AK + V I +F G+K   + P     + P + +   Q++    D    +  E+  T  DL  PT+  ++S+I+ G AE     +   S MG  +I  +K
Sbjct:    9 GDLKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPG-AE-----IEYWSVMGRRKIVRVK 131          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   67 SKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDG 408
            SKT+    G ++   +I+I   PC++VE+S +KTGKHG AK H V I +F G K   + P     + P + +   Q+I    D    +  ET  T  ++  P+DE L  ++K G
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPG 113          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 42/130 (32.31%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   91 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 480
            G ++   Y+VI   PC+VVE+S +KTGKHG AK + V I +F G+K   + P     + P + +   Q++    D    +  E   T  D+  PTD +++ +I+ G AE     V     MG ++I  +K
Sbjct:    9 GDLKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPG-AE-----VEYWEIMGRKKIVRVK 131          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_PYRAB (Translation initiation factor 5A OS=Pyrococcus abyssi GN=eif5a PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 1
Query:   85 QAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 489
            Q   ++   YI+I + PC++V ++ S  GKHG AK     + IF+GK    + P+S   D P + +   Q+I I+ D    +  E   T +   +P D  +  +I+D   EG  + V    ++G  +I  +K  G
Sbjct:    8 QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDME---TYEMFEVPIDTGVAEEIRDQLKEG--INVEYWETLGRVKIMRIKGEG 137          
BLAST of CN189618 vs. ExPASy Swiss-Prot
Match: IF5A_SULIL (Translation initiation factor 5A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   91 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIK 402
            G ++   Y+VI   PC+VVEV+ +KTGKHG AK + V I +F+G K   + P     + P + +   Q+I   +D    +  ET  T  ++  PT++ L S+I+
Sbjct:    9 GELKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMDDKIQVMDLETYET-FEIEKPTEDELASKIR 111          
The following BLAST results are available for this feature:
BLAST of CN189618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IF5A_PYRHO2.472e-1129.63Translation initiation factor 5A OS=Pyrococcus hor... [more]
IF5A_SULAC3.228e-1131.54Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_STAMF3.228e-1134.21Translation initiation factor 5A OS=Staphylothermu... [more]
IF5A_SULTO4.216e-1132.31Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_PYRAB7.191e-1128.89Translation initiation factor 5A OS=Pyrococcus aby... [more]
IF5A_SULIL9.392e-1134.62Translation initiation factor 5A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189618 ID=CN189618; Name=CN189618; organism=Citrus sinensis; type=EST; length=746bp
GACCATAAAGAAAAAACTATGTCGGACGAGGAGCACCACTTCGAATCGAA
GGCTGATGCCGGTGCATCGAAGACTTTCCCTCAGCAAGCTGGAACCATCC
GCAAGAATGGTTATATTGTCATCAAAAATCGTCCTTGCAAGGTTGTTGAA
GTTTCCACTTCAAAGACTGGCAAGCATGGACATGCCAAGTGCCACTTTGT
GGGAATTGATATATTTAATGGAAAGAAGCTTGAAGATATTGTGCCTTCCT
CCCACAATTGTGATGCTCCCCATGTTACTCGCACTGACTATCAGCTGATT
GATATATCCGAAGATGGTTTTGTGAGCCTTTTAACTGAAACCGGAAACAC
CAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTGCTTAGCCAGATTA
AAGATGGGTTTGCTGAAGGAAAAGACCTTGTGGTGACCGTTATGTCGTCA
ATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTA
ACTATAATCCCATGGCATTAGCTTTGGCTGATAGCAGGAGAACTCTTTCT
TATGTTGCCAACATGGAGACTATCTACTATCCATGTCCACAACAAACTTC
CATTAAGATAGTATTTTGGCTGTGTATTAAAATATCGTCGTGCTTGTGAT
AAAGGAAGTGGAAAGAAAGCAGGTGTCGTCAATCTCCTGTTGAACGAAAT
TTATGTTGACAGCATCTCGGACTTATATATATTTTACTATTTTATT
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