CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_EUBR3 (60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=groL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  194 KLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 580
            KLR+EDA NAT AA+EEGI+ GGG+A +H S  V  + D LE  DE+ GA ++ KAL AP   IA NA           K S   TG+NA T++Y +M+  G++DP KVTR ALQNA SVA  +LTT++
Sbjct:  391 KLRMEDALNATRAAVEEGIIAGGGSAYIHASKKVAELVDTLE-GDEKTGAKVILKALEAPLYYIAANAGLEGAVIINKVKESAPGTGFNAATEEYVDMVDNGILDPVKVTRSALQNATSVASTLLTTES 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA +AT AA+EEGIVPGGG  L+     V  + ++L D DE++GA IV KAL AP   IA NA            AS+    G++A+  ++ NM + G+IDPAKVTR ALQNAAS+AGM+LTT+ +
Sbjct:  390 KKHRIEDALSATRAAVEEGIVPGGGVTLLRSRKAVEKLLEEL-DGDEKIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVL 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STRS7 (60 kDa chaperonin OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = -3
Query:  191 KLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 580
            KLRIEDA NAT AA+EEGIV GGG AL+++ D V A++    D D   G +IV +AL  P   IA+NA           K S    G+NA T ++ +M+  G+IDP KVTR ALQNAASVAG++LTT+A+
Sbjct:  391 KLRIEDALNATRAAVEEGIVAGGGTALINVMDKVAALE---LDGDAATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSAAGVGFNAATGEWVDMIATGIIDPVKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STRGN (60 kDa chaperonin OS=Streptococcus gordonii GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = -3
Query:  191 KLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 580
            KLRIEDA NAT AA+EEGIV GGG A V + D V  ++      DE  G +IV +AL  P   IA NA           K SE  TG+NA T ++ NM++AG+IDP KVTR ALQNAASVA ++LTT+A+
Sbjct:  391 KLRIEDALNATRAAVEEGIVSGGGTAFVSVLDAVAGLE---LTGDEATGRNIVLRALEEPVRQIALNAGFEGSIVIDRLKNSEAGTGFNAATGEWVNMIEAGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STREM (60 kDa chaperonin OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = -3
Query:  191 KLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 580
            KLRIEDA NAT AA+EEGIV GGG AL+++ D V A++    D D   G +IV +AL  P   IA+NA           K S    G+NA T ++ +M+  G+IDP KVTR ALQNAASVAG++LTT+A+
Sbjct:  391 KLRIEDALNATRAAVEEGIVAGGGTALINVMDKVAALE---LDGDAATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSAAGVGFNAATGEWVDMIATGIIDPVKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STAAR (60 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEVGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLRIEDA NAT AAIEEGIV GGG  L+ +   + + +      +ER+G +IV+KAL AP   IA NA           K +E   G++A  ++Y +M+++G+IDPAKVTR ALQN+ASVA +VLTT+AI
Sbjct:  390 KKLRIEDALNATKAAIEEGIVSGGGTVLIEILKEMESFE---LSGEERIGVNIVKKALTAPLKQIAENAGLEGSIVVEKVKNAESGIGFDAAKEEYVDMIKSGIIDPAKVTRSALQNSASVAALVLTTEAI 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA           K  +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  390 KKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA           K  +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  390 KKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED--ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA NAT AA+EEGIV GGG +L+++   +PA++  L +  ADE  G  +V +AL AP   IA NA           K      GYNA T +Y +M+  G++DPAKVTR ALQNAASV+ M LTT+A+
Sbjct:  390 RKLRIEDALNATRAAVEEGIVAGGGTSLINV---IPAVRALLSEVTADEATGVKLVLRALEAPVRQIAENAGEEGSVIVEKLKNESVGVGYNAATGEYVDMIAHGIVDPAKVTRSALQNAASVSAMFLTTEAV 519          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_EUBR31.444e-2550.3960 kDa chaperonin OS=Eubacterium rectale (strain A... [more]
CH60_THENE1.886e-2550.0060 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_STRS71.886e-2550.7760 kDa chaperonin OS=Streptococcus equi subsp. zoo... [more]
CH60_STRGN1.886e-2552.3160 kDa chaperonin OS=Streptococcus gordonii GN=gro... [more]
CH60_STREM1.886e-2550.7760 kDa chaperonin OS=Streptococcus equi subsp. zoo... [more]
CH60_STAAR1.886e-2551.1560 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_METVS1.886e-2549.6260 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_LACRJ1.886e-2550.0060 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD1.886e-2550.0060 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_EXISA1.886e-2550.3860 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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