CN189514
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.061e-52 Identity = 112/151 (74.17%), Postives = 117/151 (77.48%), Query Frame = -3 Query: 131 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 583 RKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI PQGLMV Sbjct: 396 RKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 1.532e-51 Identity = 109/151 (72.19%), Postives = 117/151 (77.48%), Query Frame = -3 Query: 131 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 583 RKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA K EW GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI PQGL + Sbjct: 437 RKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 2.890e-50 Identity = 106/151 (70.20%), Postives = 115/151 (76.16%), Query Frame = -3 Query: 131 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 583 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLS +PAIK+ EDADERLGADIVQKAL++PA+LIA NA S+W GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI P+GLMV Sbjct: 436 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.098e-49 Identity = 101/131 (77.10%), Postives = 112/131 (85.50%), Query Frame = -3 Query: 191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583 R+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA K SEW GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI Sbjct: 392 RQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 6.026e-48 Identity = 107/151 (70.86%), Postives = 112/151 (74.17%), Query Frame = -3 Query: 131 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 583 RKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+ EDAD RLGADIVQKALVA SLIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI P+GLMV Sbjct: 434 RKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 9.956e-43 Identity = 91/117 (77.78%), Postives = 97/117 (82.91%), Query Frame = -3 Query: 233 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 583 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLS VPAI + +DADERLGADI+QKALVAPASLIA NA KA EW GYNAMTDKYEN+++AGVIDPAKVTRCALQN Sbjct: 379 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.998e-39 Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = -3 Query: 191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583 RKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP LIA NA + GYNAM DK EN+L AGVIDPAKVTR L N+ S+AG++LTTQA+ Sbjct: 425 RKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.458e-33 Identity = 69/131 (52.67%), Postives = 97/131 (74.05%), Query Frame = -3 Query: 191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583 RKLRIEDA NAT AA+EEGIVPGGG L+HLS V +K L + +E++GADIV++AL AP + IA+N+ ++++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+ Sbjct: 390 RKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32 Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = -3 Query: 191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583 RKLRIEDA NAT AA+EEGIVPGGGA L+HLS +PA K KL +A+E++GA+IV +AL AP IAHNA E G++A+T Y +M G++DPAKV R ALQNAAS+AGM LTT+AI Sbjct: 391 RKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAI 520
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32 Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = -3 Query: 191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583 RKLRIEDA NAT AA+ EGIVPGGG L+HL+ + ++K +L+D +E++GAD+V AL AP + IA NA + ++++ GYNAMTD YE+M+ AGV+DPAKV R LQNA S+AGMVLTT+A+ Sbjct: 390 RKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519 The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bpback to top |