CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_SALRD (60 kDa chaperonin 1 OS=Salinibacter ruber (strain DSM 13855) GN=groL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K  +EDA +AT AA++EG++PGGG A +   + +  ++  +E+ D+ +G  IV++AL AP   IA N            K  E   G+NA T++Y ++L  GV+DP KVTR AL+NAASV GM+LTT+A+
Sbjct:  404 QKALVEDALSATRAAVDEGVLPGGGVAYLRALESIEEVE--VENEDQEIGVSIVREALEAPLRQIAENTGHEGSIVVQKVKDGEGDFGFNARTEEYGDLLDQGVLDPTKVTRSALENAASVGGMLLTTEAV 532          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R++DA +AT AA+EEGIVPGGG AL+  S+ +  IK   ++ D++ G +IV+KAL APA  IA NA              + +  G+++ T +Y ++++ G+IDP KV R A+QNAASVA +++TT+A+
Sbjct:  392 RKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDLVKKGIIDPTKVVRTAIQNAASVAALLITTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_KINRD (60 kDa chaperonin 1 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=groL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 65/132 (49.24%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL-EDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA +AT AAIEEGIV GGG+ALVH    V  ++D L    DE  G  +V+KA   P   IA NA           ++ E  +G NA T +Y ++L AGV+DP KVTR AL+NAAS+A MVLTT  +
Sbjct:  390 KKHRIEDAVSATRAAIEEGIVAGGGSALVHA---VSVLEDNLGRTGDEATGVALVRKAASEPLRWIAENAGLEGYVVVEKVRSLEVGSGLNAATGEYVDLLAAGVLDPVKVTRSALRNAASIASMVLTTDTL 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = -3
Query:  200 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTT 583
            +K R++DA +AT AA+EEGI+PGGG AL+     +  +K   ++AD+  G  IV +A+  P   I  NA           +AS+   GYNA T +Y +++  GVIDP KVT+ AL NAASVAG++LTT
Sbjct:  392 KKARVDDALHATRAAVEEGIIPGGGVALIRAMQGIKGLKG--DNADQDAGISIVLRAMQEPLRTIVSNAGEDAGVVVNAVQASKGNNGYNAATGEYGDLVAQGVIDPTKVTKAALVNAASVAGLLLTT 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_METBF (60 kDa chaperonin OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K+RI+DA NAT AA+EEG+V GGG +L   +    AI D L+ + D  +G  IVQ+A+  P   IA NA           +A      GYNA  D +E++ +AGVIDP KV R  LQNAAS+AGMVLTT+A+
Sbjct:  391 KKMRIDDALNATKAAVEEGVVIGGGISLFRAA----AILDSLKLEGDREIGVKIVQRAIEEPVRQIAENAGKEGAEVVATIRAEPRELFGYNAKKDVFEDLFEAGVIDPTKVVRSGLQNAASIAGMVLTTEAL 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LEGMI (60 kDa chaperonin OS=Legionella micdadei GN=groL PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 57/131 (43.51%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R+EDA +AT AA+EEGIV GGG AL+     +  +K   E+AD+ +G +I+++A+ +P   I  NA             S+   G+NA T +Y +M++ G++DP KVTR ALQNAASVA ++LTT+ +
Sbjct:  389 RKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDGLKG--ENADQDMGINILRRAIESPLRQIVANAGYEPSVIVNKVAESKDNFGFNAATGEYGDMVEMGILDPTKVTRTALQNAASVASLMLTTECM 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 58/131 (44.27%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPA-SLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA++EGIV GGG AL+  +  +  ++   E+ D++ G +IV++AL  P   ++A+             K  E   G+NA T++YE M +AGV+DP KVTR AL+NAASVAG++LTT+A
Sbjct:  392 KKARVEDALHATRAAVQEGIVAGGGVALIRAAKGLDNVQP--ENEDQKTGVEIVRRALEEPLRQIVANTGTTDGAVVVERVKQGEGDFGFNARTEEYEKMTEAGVVDPTKVTRTALENAASVAGILLTTEA 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA--DERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKA-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA +AT AA+EEGI+PGGG AL+     V A+ D +E A  D+R+G DIV++A+ APA  IA NA           +  SE++ G+NA T +Y ++   GVIDPAKV R ALQ+AAS+AG+++TT+A+
Sbjct:  392 KKDRVDDALHATRAAVEEGILPGGGVALLRA---VKAL-DNVETANGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASIAGLLVTTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_BURTA (60 kDa chaperonin 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R++DA +AT AA+EEGIVPGGG AL+ +   +  +     + D++ G +IV +AL  P   I  NA            A     GYNA T +Y +++++GV+DP KVTR ALQNAAS+AG++LTT A
Sbjct:  392 KKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAELTGA--NVDQKAGINIVLRALEEPLRQIVANAGEEASVVVATVAAGSGNYGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_BURS3 (60 kDa chaperonin 2 OS=Burkholderia sp. (strain 383) GN=groL2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     + A+     +AD+  G  IV +A+  P   I  N             A     GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAALTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGTGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SALRD8.762e-2342.7560 kDa chaperonin 1 OS=Salinibacter ruber (strain ... [more]
CH601_RHOPS8.762e-2343.9460 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_KINRD8.762e-2349.2460 kDa chaperonin 1 OS=Kineococcus radiotolerans (... [more]
CH60_POLNS1.144e-2244.5360 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH60_METBF1.144e-2247.3760 kDa chaperonin OS=Methanosarcina barkeri (strai... [more]
CH60_LEGMI1.144e-2243.5160 kDa chaperonin OS=Legionella micdadei GN=groL P... [more]
CH60_CHLPB1.144e-2244.2760 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH603_RHIL31.144e-2247.7660 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH602_BURTA1.144e-2243.8560 kDa chaperonin 2 OS=Burkholderia thailandensis ... [more]
CH602_BURS31.144e-2246.1560 kDa chaperonin 2 OS=Burkholderia sp. (strain 38... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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