CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA NAT AAIEEGIV GGG  L+ LS+ +  +  KLE  D++ G +I+++AL AP   IA NA                  G+NA T +Y ++L+AG++D +KV R ALQ+A S+A +++TT+ +
Sbjct:  390 RKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLE-GDQKTGVEIIKRALTAPTKQIAINA--GFNGDVVVSDIKRLGKGFNAQTGEYVDLLEAGILDASKVIRLALQDAVSIASLLITTEVV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEG+VPGGG ALV     +  +K   ++ D+ +G  ++++A+ AP   I  NA           K      G+NA TD Y +M++ G++DPAKVTR ALQ AAS+ G+++TT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEDQNVGIALLRRAVEAPLRQIVANAGGEPSVVVDKVKQGSGNFGFNAATDTYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_POLSQ (60 kDa chaperonin OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  200 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTT 583
            +K R++DA +AT AA+EEGIVPGGG AL+     +  +K   ++AD+  G  IV +A+  P   I  NA           +AS    GYNA T +Y +++  GVIDP KVT+ AL NAASVAG++LTT
Sbjct:  392 KKARVDDALHATRAAVEEGIVPGGGVALIRAMQGIKGLKG--DNADQDAGISIVLRAMQEPLRTIVSNAGEDAGVVVNAVQASTGNNGYNAATGEYGDLVAQGVIDPTKVTKTALVNAASVAGLLLTT 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 58/130 (44.62%), Postives = 83/130 (63.85%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIVPGGG AL+     + AI+      ++  G +IV++A+  P   I+ NA           +    T G+NA  D+Y +M++AG+IDP KV R ALQNA+SVAG++LTT+A
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVALIRC---IKAIESLDLPGEQNWGVNIVKRAMEEPLRQISANAGAEGSIVVNQVRGGADTYGFNAAADEYCDMIEAGIIDPTKVVRSALQNASSVAGLMLTTEA 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LEPBL (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEGIVPGGG  L+   + V A+K    + DE  GA I+ ++L  P  +I +NA           K  +   G+NA++  +E+++ AGV+DPAKV R ALQNAAS+  M+LTT+
Sbjct:  391 KKARVEDALSATRAAVEEGIVPGGGLTLLKAQEAVAALK---LEGDEATGAKIIFRSLEEPIRMITNNAGLEGSVIVEHAKTKKGNEGFNALSMVWEDLVSAGVVDPAKVVRSALQNAASIGSMILTTE 516          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LEPBJ (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEGIVPGGG  L+   + V A+K    + DE  GA I+ ++L  P  +I +NA           K  +   G+NA++  +E+++ AGV+DPAKV R ALQNAAS+  M+LTT+
Sbjct:  391 KKARVEDALSATRAAVEEGIVPGGGLTLLKAQEAVAALK---LEGDEATGAKIIFRSLEEPIRMITNNAGLEGSVIVEHAKTKKGNEGFNALSMVWEDLVSAGVVDPAKVVRSALQNAASIGSMILTTE 516          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA++EGIVPGGG A +     + A+    E   ++ G ++++++L  P   IA NA           K S+   GYNA  D+Y +ML AG+IDP KV+R ALQNAASVAG++LTT+A+
Sbjct:  392 KKARVEDALHATRAAVDEGIVPGGGVAYLRALASLDALSLPTE---QQFGVNVIKRSLEEPIRQIAQNAGVDGSIVVDKVKNSKDAFGYNAAEDEYVDMLAAGIIDPTKVSRSALQNAASVAGLMLTTEAM 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_FINM2 (60 kDa chaperonin OS=Finegoldia magna (strain ATCC 29328) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 62/130 (47.69%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            RKLRIEDA  AT AA+EEGIV GGG  L+ + + V  + D +E  DE+ G  I+ KAL  P   IA NA           K  +   G++A   +Y +ML+AG++DP KVT  ALQNAASVA ++LTT+A
Sbjct:  390 RKLRIEDALAATRAAVEEGIVAGGGTILLDIIEEVEKLVDDVE-GDEKTGVKIILKALEEPVKQIAINAGIDGSVIVENVKNKDKGIGFDAYKGEYVDMLKAGIVDPTKVTLSALQNAASVASLLLTTEA 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA NAT AA+EEGIVPGGG A + +S  +  +K    D DE  G +I+++A+  P   I+ NA           +  +   G+NA + ++E++++AGVIDP KVTR ALQNAASVA ++LTT+
Sbjct:  392 KKDRVEDALNATRAAVEEGIVPGGGTAYIRISRVLDDVKPA--DDDEAAGVNIIRRAIEEPLRQISSNAGYEGSIVVEKVRDGKDGFGFNAASGEFEDLIKAGVIDPKKVTRIALQNAASVASLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA NAT AA+EEGIVPGGG ALV     +  +K    D DE  G  I+++A+  P   IA NA           K  +   G+NA T ++E+++ AGVIDP KV+R ALQNAASVA ++LTT+
Sbjct:  392 KKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKVKEGKDAFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTE 518          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROM11.495e-2245.0460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_PSEMY1.952e-2241.9860 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_POLSQ1.952e-2245.3160 kDa chaperonin OS=Polynucleobacter sp. (strain ... [more]
CH60_PELCD1.952e-2244.6260 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_LEPBL1.952e-2244.1960 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_LEPBJ1.952e-2244.1960 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_GEOSL1.952e-2245.0460 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_FINM21.952e-2247.6960 kDa chaperonin OS=Finegoldia magna (strain ATCC... [more]
CH60_DESVM1.952e-2244.9660 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_DESDG1.952e-2247.2960 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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