CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 57/131 (43.51%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA +AT AA+EEGIVPGGG AL+     +  +     + DE+ G  I++ A+ +P   I +NA           K      GYNA  D+YE M+ AG+IDP KVTR AL+NAASVA ++LTT+ +
Sbjct:  391 KKDRVDDALHATRAAVEEGIVPGGGVALIRAGAALDNVA--FHNEDEKTGIQIIRTAIESPLRAIVYNAGLEGSVIVQKVKEGTGDYGYNAREDRYEAMIAAGIIDPTKVTRLALENAASVASLLLTTECV 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +     +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +K    +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +++ AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLKGA--NADQDAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGQGNYGYNAATGEYVDLVDAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +K   ++AD+  G  IV +A+  P   I  N                   GYNA T +Y ++++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARSAISGVKG--DNADQDAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAGGTGNYGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +     +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BORGA (60 kDa chaperonin OS=Borrelia garinii GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEG+VPGGG+ L+ ++ ++  I       +E+ G +IV+++L  P   I  NA           K  +   G++A + K+ NM+++G+IDPAKVTR ALQNAAS+AG++LTT+
Sbjct:  390 KKHRVEDALSATRAAVEEGVVPGGGSTLIEVAMYLDTIDTSKLSYEEKQGFEIVKRSLEEPMRQIISNAGFEGSIYIHQIKTEKKGLGFDASSFKWVNMIESGIIDPAKVTRSALQNAASIAGLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BORBZ (60 kDa chaperonin OS=Borrelia burgdorferi (strain ZS7) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEG+VPGGG+ L+ ++ ++  I       +E+ G +IV+++L  P   I  NA           K  +   G++A + K+ NM+++G+IDPAKVTR ALQNAAS+AG++LTT+
Sbjct:  390 KKHRVEDALSATRAAVEEGVVPGGGSTLIEVAMYLDTIDTSKLSYEEKQGFEIVKRSLEEPMRQIISNAGFEGSIYIHQIKTEKKGLGFDASSFKWVNMIESGIIDPAKVTRSALQNAASIAGLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BORBU (60 kDa chaperonin OS=Borrelia burgdorferi GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEG+VPGGG+ L+ ++ ++  I       +E+ G +IV+++L  P   I  NA           K  +   G++A + K+ NM+++G+IDPAKVTR ALQNAAS+AG++LTT+
Sbjct:  390 KKHRVEDALSATRAAVEEGVVPGGGSTLIEVAMYLDTIDTSKLSYEEKQGFEIVKRSLEEPMRQIISNAGFEGSIYIHQIKTEKKGLGFDASSFKWVNMIESGIIDPAKVTRSALQNAASIAGLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BORAP (60 kDa chaperonin OS=Borrelia afzelii (strain PKo) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA +AT AA+EEG+VPGGG+ L+ ++ ++  I       +E+ G +IV+++L  P   I  NA           K  +   G++A + K+ NM+++G+IDPAKVTR ALQNAAS+AG++LTT+
Sbjct:  390 KKHRVEDALSATRAAVEEGVVPGGGSTLIEVAMYLDTIDTSKLSYEEKQGFEIVKRSLEEPMRQIISNAGFEGSIYIHQIKTEKKGLGFDASSFKWVNMIESGIIDPAKVTRSALQNAASIAGLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA NAT AA+EEGIVPGGG AL+  S  + A+     ++D+  G  IV++AL APA  IA NA             ++  T GYNA T +Y +M+  G++DP KV R ALQ+AASVAG+++T +A+
Sbjct:  392 KKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVG---ANSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATYGYNAQTGEYGDMIAMGIVDPVKVVRTALQDAASVAGLLVTAEAM 520          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CYTH31.952e-2243.5160 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_BURVI1.952e-2245.3860 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURPP1.952e-2245.3860 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH60_BURP81.952e-2244.6260 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH60_BURCE1.952e-2245.3860 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]
CH60_BORGA1.952e-2242.6460 kDa chaperonin OS=Borrelia garinii GN=groL PE=3... [more]
CH60_BORBZ1.952e-2242.6460 kDa chaperonin OS=Borrelia burgdorferi (strain ... [more]
CH60_BORBU1.952e-2242.6460 kDa chaperonin OS=Borrelia burgdorferi GN=groL ... [more]
CH60_BORAP1.952e-2242.6460 kDa chaperonin OS=Borrelia afzelii (strain PKo)... [more]
CH605_RHILO1.952e-2245.4560 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
back to top