CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIVPGGG AL+     +  +K    + ++R G +I+++A+  P   I+ NA           +  + + GYNA +  Y N+L+ GVIDP KV R ALQNAASVA ++LTT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVALIRAQSSLEKLK---VNDEQRFGVNIIRRAIEEPLRQISANAGEEGSIVVQKVRDGKDSYGYNAASGDYGNLLEMGVIDPVKVVRSALQNAASVASLMLTTEAL 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEG+VPGGG AL+     +  +K   ++A++  G  IV +A+ AP   I  NA              +   GYNA + +Y +ML+ GV+DPAKVTR ALQ+AASVAG++LTT  +
Sbjct:  392 KKARVEDALHATRAAVEEGVVPGGGVALLRARATLENLKT--DNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGNFGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_BURCH (60 kDa chaperonin 2 OS=Burkholderia cenocepacia (strain HI2424) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R++DA +AT AA+EEGIVPGGG AL+ +   +  +K    +AD+  G  IV +AL  P   I  NA                  GYNA T +Y +++++GV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKDRVDDALHATRAAVEEGIVPGGGVALIRVRQAIRELKGA--NADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAEGTGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_ARTS2 (60 kDa chaperonin 2 OS=Arthrobacter sp. (strain FB24) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLS---DHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA ++T AA+EEGIV GGG+AL+H     D  PA+     DA   +G  IV++ALV P   IA NA             S    G+NA +  YE+++ AGVIDP KVTR AL+NAAS+A +VLTT+ +
Sbjct:  389 KKHRIEDAVSSTRAALEEGIVAGGGSALIHALKALDEDPAVTALEGDAASAVG--IVRRALVQPLRWIAQNAGFDGYVVAAKVAESAVNQGFNAKSGDYEDLIAAGVIDPVKVTRAALRNAASIAALVLTTETL 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADER-LGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIV GGG AL   +  + ++K      DER +G  +V++A+ AP   IA NA           ++   T GYNA TD YE++L  GVIDPAKV R A+ NAASVA ++LTT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGIVVGGGVALFRAAASLESLKFN----DERDVGVRLVRRAVEAPLRQIAQNAGVDGTVVAEKVRSGAPTFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEAL 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_FRASC (60 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL-EDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R+EDA +AT AAIEEGI+ GGG+AL H++     + D L    DE  G  IV++AL AP S IA NA           K  E   GYNA T +Y +++ AGVIDP KVTR A+ NAAS+A +++TT+ +
Sbjct:  390 RKHRLEDAVSATRAAIEEGIIAGGGSALTHVAS---VLDDGLGRTGDELAGVRIVRRALDAPLSWIARNAGLEGAVIVSKVKELEPGRGYNAATGEYTDLIAAGVIDPVKVTRSAVANAASIAALLITTEGL 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +     +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_BURCH (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain HI2424) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +     +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_BURCA (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R+EDA +AT AA+EEGIV GGG AL+     +  +     +AD+  G  IV +A+  P   I  N             A +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++LTT A
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLTGA--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_AZOC5 (60 kDa chaperonin 1 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA NAT AA+EEGIVPGGG AL+     V A+    E+ D   G  IV +AL AP   IA N+             SE   G+NA T++Y +++  GV+DPAKV R ALQ+A+SVA +++TT+A+
Sbjct:  392 KKDRVDDALNATRAAVEEGIVPGGGVALLRAKKAVEALSS--ENPDIAAGIKIVLRALEAPIRQIAENSGVEGSIVVGKVLESEGNFGFNAQTEQYVDLVAEGVVDPAKVVRTALQDASSVASLLVTTEAL 520          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SORC51.952e-2243.5160 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH602_CHRVO1.952e-2244.2760 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH602_BURCH1.952e-2245.3860 kDa chaperonin 2 OS=Burkholderia cenocepacia (s... [more]
CH602_ARTS21.952e-2247.0160 kDa chaperonin 2 OS=Arthrobacter sp. (strain FB... [more]
CH601_SORC51.952e-2246.9760 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
CH601_FRASC1.952e-2247.7360 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) G... [more]
CH601_BURVG1.952e-2245.3860 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]
CH601_BURCH1.952e-2245.3860 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH601_BURCA1.952e-2245.3860 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH601_AZOC51.952e-2245.0460 kDa chaperonin 1 OS=Azorhizobium caulinodans (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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