CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_THISH (60 kDa chaperonin OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEG+VPGGG ALV     + ++K    D D  +G  I ++A+  P   I  N               +   GYNA T +Y +M++ G++DP KVTR ALQNAASV+G+++TT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGVVPGGGVALVRALQALKSLKGANHDQD--IGIAIARRAMEEPLRQIVSNCGEEPSVVLNNVVEGKGNYGYNAATGEYGDMIEMGILDPTKVTRSALQNAASVSGLIITTEAM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKA-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R++DA +AT AA++EGIV GGGAAL   S    A+K  LE  DE +GA+I+ +A+ AP   IA NA              SE   G+NA T +Y NML+AG+IDP KV R ALQNA SVA ++LTT+A
Sbjct:  391 KKDRVDDALSATKAAVDEGIVIGGGAALAKASK---AVKLDLEH-DEAVGAEIILRAVYAPMKQIAQNAGFDAGVVADKIANNSEANLGFNAATGEYVNMLEAGIIDPLKVARVALQNATSVASLLLTTEA 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LEPCP (60 kDa chaperonin OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIV GGG AL+        IK   ++AD+  G  +V KA+ AP   I +NA            A     G+NA  D Y +M++ G++DP KVTR ALQNAASVA ++LTT+ +
Sbjct:  392 KKARVEDALHATRAAVEEGIVAGGGVALLRAKQAAGEIKG--DNADQDAGIKLVLKAIEAPLREIVYNAGGEASVVVNAVLAGSGNYGFNAANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTECM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 61/129 (47.29%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +K R+EDA NAT AA+EEGIVPGGG A V     +  IK    D DE  G +I++++L  P   IA NA           + ++   G+NA + +YE++++AGVIDP KVTR ALQNAASVA ++LTT+
Sbjct:  392 KKDRVEDALNATRAAVEEGIVPGGGTAFVRSIKVLDDIKPA--DDDELAGLNIIRRSLEEPLRQIAANAGYEGSIVVEKVREAKDGFGFNAASGEYEDLIKAGVIDPKKVTRIALQNAASVASLLLTTE 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_JANMA (60 kDa chaperonin OS=Janthinobacterium sp. (strain Marseille) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIVPGGG AL+       AIK K ++ D+  G  IV +A+  P  +I  NA              +   GYNA    Y +M++ GV+DPAKVTR ALQNAAS+A ++LTT  +
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVALLRAR---AAIKIKGDNPDQEAGIRIVLRAMEEPLRMIVQNAGEEASVVVAKVLEGKGNFGYNAANGTYGDMVEMGVLDPAKVTRSALQNAASIAALLLTTDCM 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R++DA +AT AA+EEGIVPGGG AL   S  +  +    ++ D+R+G +IV+KAL AP   IA NA             +E +  G++A   +Y++++ AG+IDP KV R ALQ+AASV G+++TT+A+
Sbjct:  392 RKDRVDDALHATRAAVEEGIVPGGGTALARASSALKGLT--FDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASVGGLLITTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ERWT9 (60 kDa chaperonin OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEG+V GGG ALV ++  +  ++ + ED  + +G  +  +A+ +P   I  NA           KA E   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  392 KKARVEDALHATRAAVEEGVVAGGGVALVRVAAMLTELRGQNED--QNVGIKVALRAMESPLRQIVSNAGEEPSVVTNAVKAGEGNYGYNAQTEEYGNMIDFGILDPTKVTRSALQYAASVAGLMITTECM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ENTFA (60 kDa chaperonin OS=Enterococcus faecalis GN=groL PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = -3
Query:  191 KLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 580
            KLRIEDA NAT AA+EEG+V GGG ALV++   V A++    + D   G  IV +AL  P   IA NA           K  +   G+NA   ++ NM++AG++DP KVTR ALQNAASV+ ++LTT+A+
Sbjct:  391 KLRIEDALNATRAAVEEGMVSGGGTALVNVIGKVAALE---AEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANGEWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +KLRIEDA  AT AA+EEGIV GGG A V++ + V  +   +  AD ++G +I+ K+L  P   IA NA           K SE   GY+A+  +Y NM++ G++DP KVTR ALQNAASVA   LTT+A
Sbjct:  390 KKLRIEDALAATKAAVEEGIVAGGGTAYVNVINEVAKLTSDV--ADTQIGINIIVKSLEEPVRQIATNAGVEGSVIIEKVKNSEPGIGYDALHGEYINMIKGGIVDPTKVTRSALQNAASVASTFLTTEA 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CHRSD (60 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA ++T AA+EEG+VPGGG ALV + + +  +K   ++ D+  G  I  +A+ AP   I  NA           KA E   GYNA T +Y ++   GV+DPAKVTR ALQ+A SVAG+++TT+A+
Sbjct:  392 KKARVEDALHSTRAAVEEGVVPGGGTALVRILNKLVDLKG--DNEDQTHGIAIALRAMEAPLRQIVTNAGQEASVIVNQVKAGEGNYGYNAQTGEYGDLFDMGVLDPAKVTRSALQSAGSVAGLMITTEAM 520          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THISH2.549e-2241.9860 kDa chaperonin OS=Thioalkalivibrio sp. (strain ... [more]
CH60_SULNB2.549e-2249.6260 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_LEPCP2.549e-2244.2760 kDa chaperonin OS=Leptothrix cholodnii (strain ... [more]
CH60_LAWIP2.549e-2247.2960 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH60_JANMA2.549e-2245.0460 kDa chaperonin OS=Janthinobacterium sp. (strain... [more]
CH60_GLUOX2.549e-2243.9460 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH60_ERWT92.549e-2242.7560 kDa chaperonin OS=Erwinia tasmaniensis (strain ... [more]
CH60_ENTFA2.549e-2246.9260 kDa chaperonin OS=Enterococcus faecalis GN=groL... [more]
CH60_CLOB82.549e-2247.6960 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH60_CHRSD2.549e-2244.2760 kDa chaperonin OS=Chromohalobacter salexigens (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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