CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKAS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R++DA +AT AA+EEGIV GGGAAL+   +   A+K+ L+  DE++GADIV++AL AP   IA NA             + E   G++A   ++ NM +AG+IDP KV R ALQNA SVA ++LTT+A
Sbjct:  391 KKDRVDDALSATKAAVEEGIVIGGGAALIKAGN---AVKENLK-GDEKIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEA 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BUCCC (60 kDa chaperonin OS=Buchnera aphidicola subsp. Cinara cedri GN=groL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEG+VPGGG ALV +++ +  I  + ED  + +G  +  +A+ AP   I  N+           K      GYNA TD+Y +M+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  392 KKARVEDALHATRAAVEEGVVPGGGVALVRVAEKISRINGQNED--QNVGIRVALRAMEAPLRQIVANSGEEPSVVTNNVKDGHGNYGYNAATDEYGDMISFGILDPTKVTRSALQYAASVAGLMITTECM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BIFAA (60 kDa chaperonin OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=groL PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AAIEEG++PGGG AL+  +    A  D   + DE  GA IV +A+ AP   IA NA           ++     G NA T++YE++L AGV DP KVTR ALQNAAS+AG+ LTT+A+
Sbjct:  390 RKHRIEDAVRNAKAAIEEGLLPGGGVALIQAA--AKAKDDVKLEGDEATGAAIVFRAVEAPIKQIAENAGLSGDVVIDKVRSLPDGQGLNAATNEYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA NAT AA+EEG+VPGGG A +     + A+        E+ G DI+++A+  P   I  N            K S    G+NA T  YE++L AGVIDPAKV+R ALQNAASV+ ++LTT+A+
Sbjct:  391 KKARVEDALNATRAAVEEGVVPGGGVAYIRC---LKALDGLQLSGGEKFGVDIIRRAVEEPLRQIVGNGGLEGSVVVNKVKESSGPFGFNAATGTYEDLLAAGVIDPAKVSRTALQNAASVSSLMLTTEAM 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_THEFY (60 kDa chaperonin 1 OS=Thermobifida fusca (strain YX) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AA+EEGI+PGGG AL+  S    A  +KLE + DE +GA IV++A+  P   IA NA           K+ E   G NA T +Y ++ + GVIDP KVTR ALQNAAS+AG+ LTT+A+
Sbjct:  391 RKHRIEDAVRNAKAAVEEGILPGGGVALLQASI---AAFEKLELEGDEAIGASIVRRAVEEPLKQIAINAGYEGGVVVEKVKSLEPGIGLNAATGEYTDLFKDGVIDPTKVTRSALQNAASIAGLFLTTEAV 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_STRAL (60 kDa chaperonin 1 OS=Streptomyces albus G GN=groL1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL-EDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R+EDA +AT AA+EEGIV GGG+ALVH    V  + D L    DE  G  +V++A V P   IA NA              +   G+NA T +Y ++++AGVIDP KVTR AL+NAAS+A ++LTT+ +
Sbjct:  392 RKHRLEDAISATRAAVEEGIVSGGGSALVHA---VKVLDDNLGRTGDEATGVAVVRRAAVEPLRWIAENAGLEGYVITTKVAELDKGQGFNAATGEYGDLVKAGVIDPVKVTRSALENAASIASLLLTTETL 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_MYCSS (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain MCS) GN=groL1 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AA+EEGIV GGG AL+  +   P++++     DE  GA+IV+ AL AP   IA N            + S   TG NA T +YE++L AGV DP KVTR ALQNAAS+A + LTT+A+
Sbjct:  390 RKHRIEDAVRNAKAAVEEGIVAGGGVALLQAA---PSLEELNLTGDEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSAAGTGLNAATGEYEDLLAAGVADPVKVTRSALQNAASIAALFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_MYCSK (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain KMS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AA+EEGIV GGG AL+  +   P++++     DE  GA+IV+ AL AP   IA N            + S   TG NA T +YE++L AGV DP KVTR ALQNAAS+A + LTT+A+
Sbjct:  390 RKHRIEDAVRNAKAAVEEGIVAGGGVALLQAA---PSLEELNLTGDEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSAAGTGLNAATGEYEDLLAAGVADPVKVTRSALQNAASIAALFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_MYCSJ (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain JLS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AA+EEGIV GGG AL+  +   P++++     DE  GA+IV+ AL AP   IA N            + S   TG NA T +YE++L AGV DP KVTR ALQNAAS+A + LTT+A+
Sbjct:  390 RKHRIEDAVRNAKAAVEEGIVAGGGVALLQAA---PSLEELNLTGDEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSAAGTGLNAATGEYEDLLAAGVADPVKVTRSALQNAASIAALFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K ++EDA NAT A +EEGIV GGG AL  L       K    D+DE+ G +IV KAL  P  +I  NA           K S+ T  GY+A  ++Y +M++AG++DPAKVTR AL+NAAS+A ++LTT+ +
Sbjct:  390 KKFKVEDALNATRAGVEEGIVAGGGVAL--LKTQTVLEKINAADSDEKTGIEIVLKALEGPIRMIIENAGLEASVVVDKVKNSKDTAFGYDADNNEYVDMIKAGIVDPAKVTRTALENAASIASLILTTETL 519          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMHC2.549e-2247.3360 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_BUCCC2.549e-2242.7560 kDa chaperonin OS=Buchnera aphidicola subsp. Ci... [more]
CH60_BIFAA2.549e-2248.0960 kDa chaperonin OS=Bifidobacterium adolescentis ... [more]
CH602_MYXXD2.549e-2245.0460 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH601_THEFY2.549e-2249.2460 kDa chaperonin 1 OS=Thermobifida fusca (strain ... [more]
CH601_STRAL2.549e-2246.2160 kDa chaperonin 1 OS=Streptomyces albus G GN=gro... [more]
CH601_MYCSS2.549e-2248.0960 kDa chaperonin 1 OS=Mycobacterium sp. (strain M... [more]
CH601_MYCSK2.549e-2248.0960 kDa chaperonin 1 OS=Mycobacterium sp. (strain K... [more]
CH601_MYCSJ2.549e-2248.0960 kDa chaperonin 1 OS=Mycobacterium sp. (strain J... [more]
CH60_UNCTG3.330e-2245.4560 kDa chaperonin OS=Uncultured termite group 1 ba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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