CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:550..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BAUCH (60 kDa chaperonin OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA ++T AA+EEG+V GGG AL+  ++ +  +    ++ D+ +G  + ++A+ AP   I  NA           KA +   GYNA T+KY NM+  G++DP KVTR ALQ AAS+AG+++TT+ +
Sbjct:  392 KKARVEDALHSTRAAVEEGVVAGGGVALIRAANGIQQLCG--DNEDQNVGIKVARRAMEAPLRQIVANAGEEPSVIANNVKAEDGNMGYNAATEKYGNMIDMGILDPTKVTRSALQYAASIAGLMITTECM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ACIF5 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIVPGGG ALV     +   K    D D  +G  I+++A+  P   I  NA              +   GYNA TD+Y +M + GVIDP KVTR ALQ A+S+AG+++TT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVALVRARHALEGFKTANHDQD--MGVAIIRRAIEEPLRQIVANAGGEGSVVLNKVVDGKDGYGYNAATDEYGDMFEMGVIDPTKVTRTALQKASSIAGLMITTEAM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ACIF2 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIVPGGG ALV     +   K    D D  +G  I+++A+  P   I  NA              +   GYNA TD+Y +M + GVIDP KVTR ALQ A+S+AG+++TT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVALVRARHALEGFKTANHDQD--MGVAIIRRAIEEPLRQIVANAGGEGSVVLNKVVDGKDGYGYNAATDEYGDMFEMGVIDPTKVTRTALQKASSIAGLMITTEAM 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 58/132 (43.94%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKA-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA +AT AA+EEGI+PGGG AL+     +  +K    + D+R+G D+V++A+ AP   IA NA           +  +E++ G+NA T++Y ++   GVIDPAKV R ALQ+AASVAG+++TT+A+
Sbjct:  392 KKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDGLKTA--NNDQRVGVDLVRRAIEAPVRQIAENAGAEGSIIVGKLREKTEFSYGWNAQTNEYGDLYAMGVIDPAKVVRTALQDAASVAGLLVTTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH605_BURXL (60 kDa chaperonin 5 OS=Burkholderia xenovorans (strain LB400) GN=groL5 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            +K R++DA +AT AA+EEGIVPGGG AL+ + + +  +K    +AD+  G  IV +AL  P   I  NA                  GYNA T +Y +++++GV+DP KVTR ALQNAASVA ++LTT A
Sbjct:  392 KKDRVDDALHATRAAVEEGIVPGGGVALIRVRNAISGLKGA--NADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAEGSGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASVAALLLTTDA 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 61/132 (46.21%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA NAT AA++EGIVPGGG AL+     V  I +  ++AD + G +IV KAL AP   IA NA             ++  T G++A T++Y +ML  G++DPAKV R ALQ+AASVA +++TT+A+
Sbjct:  392 KKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVAALLVTTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK R++DA +AT AA+EEGIVPGGG AL+  S+ +  +K K +D  ++ G +IV+KAL  PA  IA NA              + +  G+++ + +Y N++  G+IDP KV R A+QNAASVA +++TT+A+
Sbjct:  392 RKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTKNDD--QKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYNYGFDSQSGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAM 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_PROM9 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  197 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 583
            +KLRIED+ NAT AAIEEG+V GGG  L+ +SD +  +  K  D D R G +IV++AL+ P   IA NA                  G+NA + KYEN+ ++G++DP KV R ALQ++ S+A M+LTT+
Sbjct:  390 KKLRIEDSLNATKAAIEEGVVSGGGQTLIEISDELLNLSQKSSD-DLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEI--KRLNKGFNANSGKYENLKESGILDPTKVIRLALQDSVSIAAMLLTTE 515          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_MYXXD (60 kDa chaperonin 1 OS=Myxococcus xanthus (strain DK 1622) GN=groL1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA +AT AA+EEGIVPGGG A +     +PA++      ++  G  I+++AL  P   IA NA           +      GYNA T+ YE++ +AGVIDP KV R ALQNAASVA ++LTT+A+
Sbjct:  392 KKARVEDALHATRAAVEEGIVPGGGVAYLRA---LPALEKLKPGGEQDFGVAIIRRALQEPLRKIASNAGVEGAVVINKVREGTGAFGYNARTEVYEDLEKAGVIDPTKVERTALQNAASVASLLLTTEAM 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_ACIC1 (60 kDa chaperonin 1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=groL1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 65/132 (49.24%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA     AA+EEGIV GGG AL+          +KL+ + DE  GA IV+ AL AP   IA NA           ++ E   G NA T +Y +M++AG+IDPAKVTR ALQNAAS+AG+ LTT+A+
Sbjct:  390 RKHRIEDAVRNAKAAVEEGIVAGGGVALLQAGK---TAFEKLDLEGDEATGARIVELALEAPLKQIAINAGLEGGVVVEKVRSLEPGWGLNAQTGEYVDMIKAGIIDPAKVTRSALQNAASIAGLFLTTEAV 518          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BAUCH3.330e-2240.4660 kDa chaperonin OS=Baumannia cicadellinicola sub... [more]
CH60_ACIF53.330e-2244.2760 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_ACIF23.330e-2244.2760 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH605_RHIME3.330e-2243.9460 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]
CH605_BURXL3.330e-2244.6260 kDa chaperonin 5 OS=Burkholderia xenovorans (st... [more]
CH602_RHOPS3.330e-2246.2160 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_RHOP53.330e-2243.1860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_PROM93.330e-2244.9660 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_MYXXD3.330e-2245.0460 kDa chaperonin 1 OS=Myxococcus xanthus (strain ... [more]
CH601_ACIC13.330e-2249.2460 kDa chaperonin 1 OS=Acidothermus cellulolyticus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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