CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.490e-27
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E  GA IV +AL AP   IA NA           K   +  G+NA T+++ +M +AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  390 KKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.490e-27
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E  GA IV +AL AP   IA NA           K   +  G+NA T+++ +M +AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  390 KKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLRIEDA  AT AA+EEGIV GGG ALV++   V  + D +   DE+ G  I+ +AL  P   IA NA           KASE   G++A  +KY NM++AG++DPAKVTR ALQNAASVA MVLTT+++
Sbjct:  390 KKLRIEDALAATKAAVEEGIVAGGGTALVNVIPKVAKVLDTVS-GDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVDPAKVTRSALQNAASVASMVLTTESV 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA+IV  AL AP   IA NA           KA     G+NA + +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  390 KKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASSLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAEGFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 60/133 (45.11%), Postives = 86/133 (64.66%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKAS--EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEG+VPGGG  L+ LS+ V  IK ++ D ++++GADI+++AL  P  LIA NA             +      GYNA TD +EN+++ G+IDP+KV RC+++NA SVA   L    +
Sbjct:  276 KKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVV 408          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T A +EEG+VPGGG ALV++   V  +     + DE  GA IV +AL  P   I HNA           K  +   GYNA TD++ NM++AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAGVEEGMVPGGGTALVNIHRQVSELT---LEGDEATGASIVLRALEEPVRQIVHNAGLEGSIIVERLKGEKVGIGYNAATDEWVNMVEAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T AA+EEGIV GGG ALV + + V A++      D   G  IV KAL AP   IA NA           K +E   GYNA TD++ NM+ AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAAVE---ATGDVATGVKIVLKALEAPIRQIAENAGLEGSVIVEKIKHAETGVGYNAATDEWVNMIDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA NAT AA+EEGIV GGG A +H++  V +I   +   DE  G +IV +AL AP   IA NA           K      GYNA TD+Y +M++ G++DPAKVTR ALQNAASV+ M LTT+A+
Sbjct:  390 RKLRIEDALNATRAAVEEGIVAGGGTAFIHVTKAVESIL-AVTTGDEATGVNIVLRALEAPLRQIAENAGQEGSVIVERLKHEAQGMGYNAATDEYVDMIETGIVDPAKVTRSALQNAASVSAMFLTTEAV 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA           K  +   GY+A  D++ NM +AG++DPAKVTR ALQNAAS+A +VLTT+ +
Sbjct:  392 KKHRIEDALSATKAAVEEGIVPGGGVALLRT---IKALDDVKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAANDRFVNMFEAGIVDPAKVTRSALQNAASIAALVLTTEGL 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CHLTR (60 kDa chaperonin OS=Chlamydia trachomatis GN=groL PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DE++GA IV KAL AP   IA NA            +     GY+A+ D Y +ML+AG++DPAKVTR AL++AASVAG++LTT+A+
Sbjct:  392 KKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEAL 522          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ANAVT4.490e-2750.3860 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP4.490e-2750.3860 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_CLOTH5.864e-2751.9160 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH602_SYNSC5.864e-2751.1560 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
RUBB_CHLRE7.658e-2745.11RuBisCO large subunit-binding protein subunit beta... [more]
CH60_OCEIH7.658e-2751.1560 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_MACCJ7.658e-2753.4460 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_EXIS27.658e-2751.9160 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_DICT67.658e-2749.2460 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_CHLTR7.658e-2748.0960 kDa chaperonin OS=Chlamydia trachomatis GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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