CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:550..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA--DERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            RKLRIEDA NAT AA+EEGIV GGG ALV++   +PA++  LE +  DE+ G  I+++AL  P   IA NA            +S+   GY+ + +KY NM++AG++DP KVTR ALQNAAS++ M+LTT++
Sbjct:  390 RKLRIEDALNATRAAVEEGIVAGGGTALVNV---IPAVEALLEGSQGDEKTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDKGIGYDVLNNKYVNMIEAGIVDPTKVTRSALQNAASISAMLLTTES 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA+IV  AL AP   IA NA           K+     GYNA    Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  390 KKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K +E   G+NA TD++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATDEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_ODOSI (60 kDa chaperonin, chloroplastic OS=Odontella sinensis GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIVPGGGA L HL++++          DE +GA I+ +A+VAP   IA NA           +  E+  GYNA  + + NM   G++DPAKVTR  LQNA S+A M+LTT+ I
Sbjct:  392 KKLRLEDAINATRAAVEEGIVPGGGATLAHLAENLLTWAKINLKEDELIGAMIISRAIVAPLKRIAENAGINGPVIIEKVQQQEFEIGYNAAKNVFGNMYDEGIVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLRIEDA NAT AA+EEGIVPGGG   V++   +  ++ +L D  ER G DI+++AL AP   IA+NA           K S    G++A++++Y +M+ AG++DPAKVTR ALQNAAS+A M+LTT+ +
Sbjct:  391 KKLRIEDALNATRAAVEEGIVPGGGTVYVNVIPVLNGLEPELPD--ERTGVDIIKRALEAPLRQIANNAGVEGSIVVEKVKESPAGVGFDALSEQYTDMIGAGIVDPAKVTRIALQNAASIAAMILTTETL 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E  GA IV +AL AP   IA NA           K   +  GY+A  +++ NM  AG++DPAKVTR ALQNAAS+A MVLTT+ I
Sbjct:  390 RKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLEEWATANLSGEELTGAQIVARALTAPLKRIAENAGLNGAVISERVKELPFDEGYDASNNQFVNMFTAGIVDPAKVTRSALQNAASIAAMVLTTECI 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RK RIEDA NAT AA+EEG V GGG ALV +   +     K +  D + G +IV KAL AP   IA NA           +  +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  390 RKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CYACA (60 kDa chaperonin, chloroplastic OS=Cyanidium caldarium GN=groL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+ED+ NAT AAIEEGIVPGGG ALVH+S ++         +DE LGA+IV++A +AP   IA N+           +   +  GY+A+++   +M  AG+IDPAKVTR A+QNAAS+A MVLTT+ +
Sbjct:  391 KKLRLEDSINATKAAIEEGIVPGGGTALVHISANLKQWAKINLSSDELLGANIVEQASLAPLHKIAENSGKNGSLIVEALEHKNFEIGYDALSNSLVDMYDAGIIDPAKVTRSAIQNAASIASMVLTTECV 521          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + DE  G +IV +AL  P   IAHNA           K  E   GYNA T ++ NM+  G++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAALE---AEGDELTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEEIGVGYNAATGEWVNMIDKGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E  GA IV +AL AP   IA NA           K   +  GY+A  +++ NM  AG++DPAKVTR ALQNAAS+A MVLTT+ I
Sbjct:  390 RKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLEEWATANLSGEELTGAQIVARALTAPLKRIAENAGLNGAVISERVKELPFDEGYDASNNQFVNMFTAGIVDPAKVTRSALQNAASIAAMVLTTECI 520          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ALKMQ1.000e-2649.2460 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH601_SYNS91.306e-2651.1560 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_STAAB1.706e-2652.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_ODOSI1.706e-2648.0960 kDa chaperonin, chloroplastic OS=Odontella sine... [more]
CH60_DESAP1.706e-2648.8560 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH60_SYNE72.228e-2650.3860 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH60_LACGA2.228e-2651.1560 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_CYACA2.228e-2648.8560 kDa chaperonin, chloroplastic OS=Cyanidium cald... [more]
CH60_BACLD2.228e-2651.9160 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH601_SYNP62.228e-2650.3860 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
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