CN189514

Overview
NameCN189514
Unique NameCN189514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:550..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIK  L++ +E++GADIV++AL  P  LIA NA            +++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  446 KKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIK  L++ +E++GADIV++AL  P  LIA NA            +++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  446 KKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            R+ R+EDA NAT AA++EG V GGG ALV++ + V A K   +D  E+ G +IV +AL AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++LTT+A+
Sbjct:  390 RRYRVEDALNATRAAVDEGYVAGGGTALVNVEEAVKATKGDTDD--EQTGINIVARALTAPVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            R+ R+EDA NAT AA++EG V GGG ALV++ + V A K   +D  E+ G +IV +AL AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++LTT+A+
Sbjct:  390 RRYRVEDALNATRAAVDEGYVAGGGTALVNVEEAVKATKGDTDD--EQTGINIVARALTAPVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA           K  +   GY+A  D++ NM  AG++DP KVTR ALQNAAS+A +VLTT+ +
Sbjct:  392 KKHRIEDALSATKAAVEEGIVPGGGVALIRT---IKALDDIKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAARDRFVNMFDAGIVDPCKVTRSALQNAASIAALVLTTEGL 520          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            +K R+EDA NAT AA+EEGIVPGGG A +     + A+K    + DE++G +IV+KAL  P  +IA NA           K      G+NA T+ YE+M++AGVIDP KVTR ALQNAASVA ++LTTQ +
Sbjct:  392 KKARVEDALNATRAAVEEGIVPGGGVAYIRTLPILEALK---LEGDEQVGVNIVRKALEEPLKMIAANAGMEGTIVVEKVKEQSGAFGFNARTEVYEDMIEAGVIDPTKVTRFALQNAASVASLMLTTQCM 519          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLRIEDA N+T AA+ EGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K +E   GYNA TD++ NML AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  390 RKLRIEDALNSTRAAVGEGIVAGGGTALVNVYKQVSEIE---AEGDVETGINIVLKALEAPVRQIAENAGLEGSIIVEKLKHAEPGIGYNAATDEWVNMLDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CLODI (60 kDa chaperonin OS=Clostridium difficile GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            RKLRIEDA NAT AA+EEGIV GGG A V +   +PAI   +E  + + +LGA IV+KAL  P   IA NA             SE  TG++A+ +KY NM++AG++DP KV+R ALQNAAS+A   LTT+A
Sbjct:  390 RKLRIEDALNATRAAVEEGIVAGGGTAFVSV---IPAIGTLIESLEGEVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEA 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH60_CLOD6 (60 kDa chaperonin OS=Clostridium difficile (strain 630) GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  194 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 583
            RKLRIEDA NAT AA+EEGIV GGG A V +   +PAI   +E  + + +LGA IV+KAL  P   IA NA             SE  TG++A+ +KY NM++AG++DP KV+R ALQNAAS+A   LTT+A
Sbjct:  390 RKLRIEDALNATRAAVEEGIVAGGGTAFVSV---IPAIGTLIESLEGEVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEA 518          
BLAST of CN189514 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  191 RKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPA-IKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 583
            RKLR+EDA NAT AA+EEGIVPGGG  + H++  +    K +++D +E  G  IV +AL AP   IA NA           +   +  GY+A+ +K+ NM +AG++DPAKVTR ALQNAAS+ GMVLTT+ +
Sbjct:  390 RKLRLEDAINATKAAVEEGIVPGGGTTIAHIAPQLEEWAKSQMKD-EELTGTMIVARALYAPLRRIADNAGANGAVIVERVRELPFDEGYDAVANKFVNMFEAGIVDPAKVTRSALQNAASIGGMVLTTEGV 520          
The following BLAST results are available for this feature:
BLAST of CN189514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_BRANA2.910e-2648.48RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH2.910e-2648.48RuBisCO large subunit-binding protein subunit beta... [more]
CH60_LACDB2.910e-2648.8560 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA2.910e-2648.8560 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_DICTD2.910e-2648.4860 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH602_SYNAS2.910e-2650.3860 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH60_STACT3.801e-2653.4460 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH60_CLODI3.801e-2651.5260 kDa chaperonin OS=Clostridium difficile GN=groL... [more]
CH60_CLOD63.801e-2651.5260 kDa chaperonin OS=Clostridium difficile (strain... [more]
CH603_ANAVT3.801e-2648.4860 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001P19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189514 ID=CN189514; Name=CN189514; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAAGACACGATTTTATATCAATTAAGTAAAAC
TTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAAACCTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGT
back to top