EY757014

Overview
NameEY757014
Unique NameEY757014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_THAPS (50S ribosomal protein L3, chloroplastic OS=Thalassiosira pseudonana GN=rpl3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.147e-49
Identity = 96/173 (55.49%), Postives = 126/173 (72.83%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 602
            TQVKT   DGY+A+Q+GY  V  K LT+P+LGHLQKS + P+++L+EF +     F  GQ L  E  F  G L++V+G +IGKGF G  KR+NF RG MTHGSK+HR  GSIG GT+PGRV  GKKM G++G  T  I KL+IV+++ND  ++++KGAVPGKPGNLL + P+K
Sbjct:   36 TQVKTTLNDGYNAIQVGYGNVSTKALTQPQLGHLQKSNIQPLKYLKEFHVSDPTEFNVGQILNVES-FVAGQLINVTGKSIGKGFSGLQKRYNFARGPMTHGSKNHRAPGSIGMGTSPGRVLPGKKMAGQLGNKTANIKKLKIVQVNNDENILVVKGAVPGKPGNLLSIIPSK 207          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_PHATR (50S ribosomal protein L3, chloroplastic OS=Phaeodactylum tricornutum GN=rpl3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.147e-49
Identity = 95/172 (55.23%), Postives = 126/172 (73.26%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            TQVK ++ DGYD++QIGY  V  K LT+PELGHLQKS + P+++L+EFR+     F+ GQ L  +  F  G LV++ G +IGKGF G  KRHNF RG MTHGSK+HR  GSIG GTTPGRV  GKKM G++G     I KL+I++I+++  +++IKG+VPGKPGNLL + P+
Sbjct:   36 TQVKNQSKDGYDSIQIGYGNVLSKALTQPELGHLQKSNIQPLKYLKEFRINQETEFQIGQVLNVDS-FTPGQLVNIQGKSIGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMSGQLGNKITTIKKLKIIQINSEENILVIKGSVPGKPGNLLSIVPS 206          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_PROMT (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL2A) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.369e-49
Identity = 96/176 (54.55%), Postives = 128/176 (72.73%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQ+K+  TDGY AVQIG++ +R+K + KP  GHL KSG   +RHL+E+R+++   FE G  +  ++ F +G  VD+SG T+G+GF G  KRH F RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GRMGG       LEI+KID +  ++++KG+VPGKPG+LL + PAK VG
Sbjct:   36 TQLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDISGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSLLNIRPAKRVG 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_SYNJA (50S ribosomal protein L3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.012e-49
Identity = 95/177 (53.67%), Postives = 133/177 (75.14%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQ+KT+ATDGY+AVQ+GY    +K LT+ + GHL K+G+  + RHL+EFR+   + ++ GQK+  E IF+ G L+DV+GT+IG+GF G  KRH+F RG M+HGSK+HR+ GS+GAGTTPGRV+ G +M GRMGG    I KL++V++D +  +++IKG+VPG  G LL + PAK VG
Sbjct:   36 TQIKTQATDGYNAVQLGYWPTAEKHLTRAQRGHLSKAGVTELLRHLREFRVDQPEAYQLGQKITVE-IFSPGQLLDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSVGAGTTPGRVFPGLRMAGRMGGCRVTIRKLQLVQVDPERNLLIIKGSVPGVEGGLLEITPAKQVG 211          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_SYNS9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9902) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.196e-48
Identity = 96/176 (54.55%), Postives = 123/176 (69.89%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQ+K + TDGY AVQIG+   R+K + KP  GHL KSG   +RHL+E+R+ ++DG E G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HRQ GSIGAGTTPGR+Y GK+M GR GG       L I++ID+D  ++++KG+VPGKPG LL + PA  VG
Sbjct:   36 TQLKNDDTDGYAAVQIGFGETREKLINKPSKGHLTKSGEDLLRHLREYRVDNVDGLELGGSITVSD-FEAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKTTTRGLTILRIDSDRNLLVVKGSVPGKPGALLNIKPAVRVG 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_SYNR3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain RCC307) GN=rplC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.040e-48
Identity = 94/176 (53.41%), Postives = 124/176 (70.45%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQVKT   DGY AVQ+G+  VR+K + +P  GHL+KSG   +RHL+E+R+ S DG E G  +  +  F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GGT   +  L ++K+D++  ++++KG+VPGKPG LL + PA  VG
Sbjct:   36 TQVKTPTNDGYSAVQVGFGDVREKLVNQPAKGHLKKSGEDLLRHLKEYRVDSTDGVELGSSVTVDA-FEPGQKVDVSGDTMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGTKTTVKGLVVLKVDSERNLLVVKGSVPGKPGALLSIRPAVRVG 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_SYNPW (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH7803) GN=rplC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.545e-48
Identity = 95/176 (53.98%), Postives = 120/176 (68.18%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQ+KT  TDGY AVQIG+   RDK + KP  GHL KSG   +RHL E+R+  ++G E G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG       L I+K+D+D  ++++KG+VPGKPG LL + PA  VG
Sbjct:   36 TQLKTTETDGYSAVQIGFGETRDKLVNKPAKGHLAKSGEGVLRHLSEYRVDDVNGLELGGAVTVSD-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKTTTRGLTILKVDSDRNLLVVKGSVPGKPGALLNIRPANRVG 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_RHDSA (50S ribosomal protein L3, chloroplastic OS=Rhodomonas salina GN=rpl3 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.752e-48
Identity = 89/176 (50.57%), Postives = 127/176 (72.16%), Query Frame = 3
Query:   78 LCTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 605
            + TQ+KT+ +D Y A+QIG+  V++  L KP LGHL+KS    ++HL+E+R++S++G E  QK+  +  F  G  V VSG TIGKGF G ++R++F RG MTHGSK+HR+ GSIG G+TPG+V+KGKKM GR+GG    I  LEIV ++ D  ++++KGAVPGK GN+L +   +I
Sbjct:   34 ILTQIKTQESDSYQAIQIGFSEVKESSLNKPLLGHLKKSQAPALKHLKEYRVKSVEGLEVAQKITLDS-FEVGKTVSVSGKTIGKGFAGTVRRYSFTRGPMTHGSKNHREPGSIGQGSTPGKVHKGKKMAGRLGGKQSTIKNLEIVHVNTDNNILVVKGAVPGKKGNILSIQQEEI 208          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_CYAPA (50S ribosomal protein L3, cyanelle OS=Cyanophora paradoxa GN=rpl3 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.752e-48
Identity = 92/175 (52.57%), Postives = 127/175 (72.57%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIV 608
            TQ+KT ATDGY+A+Q+GYR  ++K LTK +LGHLQK+    +R LQEF ++S D  E  + +  E +FN+ D+V++ G +IG+GF G  KRHNF RG M+HGSK+HR  GSIGAG+TPGRVY G +M GR G +   I  L+IVK+D++  ++++KG+VPGKPG LL +   K V
Sbjct:   36 TQIKTTATDGYNAIQVGYRETKEKNLTKAQLGHLQKTNNSALRVLQEFSIESSDSIEVEKPITVE-LFNDNDIVNIQGYSIGRGFSGYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKVDSERSLLIVKGSVPGKPGGLLTITQVKKV 209          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_ODOSI (50S ribosomal protein L3, chloroplastic OS=Odontella sinensis GN=rpl3 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.013e-47
Identity = 90/169 (53.25%), Postives = 126/169 (74.56%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRV 590
            TQVKT+  DGY+A+QIGY  V +K LT+PELGHLQKS + P+++L+EFR+ + + F+ GQ +  E + + G  +DV+G + GKGF G  KRHNF RG MTHGSK+HR  GSIG GTTPGRV  GKKM G++G    K  KL+I++++ +  ++++KG+VPGKPGNL+ +
Sbjct:   36 TQVKTDLNDGYNAIQIGYGTVSNKSLTQPELGHLQKSNIQPLKYLKEFRVNNPEEFKVGQVVNVESL-STGQFIDVTGKSSGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKVTKTKKLKIIQVNGNENILVVKGSVPGKPGNLVTI 203          
The following BLAST results are available for this feature:
BLAST of EY757014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3_THAPS3.147e-4955.4950S ribosomal protein L3, chloroplastic OS=Thalass... [more]
RK3_PHATR3.147e-4955.2350S ribosomal protein L3, chloroplastic OS=Phaeoda... [more]
RL3_PROMT5.369e-4954.5550S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_SYNJA7.012e-4953.6750S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNS91.196e-4854.5550S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNR32.040e-4853.4150S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNPW4.545e-4853.9850S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RK3_RHDSA7.752e-4850.5750S ribosomal protein L3, chloroplastic OS=Rhodomo... [more]
RK3_CYAPA7.752e-4852.5750S ribosomal protein L3, cyanelle OS=Cyanophora p... [more]
RK3_ODOSI1.013e-4753.2550S ribosomal protein L3, chloroplastic OS=Odontel... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757014 ID=EY757014; Name=EY757014; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGTGTCGTACTTCGCGCCCGACGGAACTGTTGTTCCGGTGA
CTGTAGTTGGGTTCAGAGAAGGGAATATTGTGCACCCAAGTTAAGACTGA
AGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGGG
ACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTTA
ATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGTT
TGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGATC
TTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCATT
AAGCGGCACAATTTCAGAAGGGGTGCGATGACCCATGGTTCTAAGAGTCA
TAGACAATTGGGTTCCATTGGTGCTGGAACAACTCCGGGCCGTGTATACA
AGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACAACAAGGAAGATCTGA
AAGCTCGAGATTGTAAAAATTGATAATGACCTTCGTGTTGTAATGATAAA
AGGGGCTGTCCCTGGTAAGCCCGGAAATCTTCTGCGTGTAGCACCAGCTA
AGATTGTTGGGAAGAACATACCAAATAACTAGGTTGGTGCATTATTCTGA
TTGCTTCGCTTTGTGCAGTTCTACATTGGCAAAGAGATTAGTCTTTGTAA
ACCCTTCGTTTTGTGAGTGGAATTTAGACTTTCAGTTAACATCTTGTGAT
GTATCATTGGCTCCTTTGCCAGATACATTTCTATCTCTCTTAGGATTTTG
AATTAAGATTGCCTTCAGCGGAGAAAACCCATATTAATCTTACAAGGGCA
TACACTTTGCCAAAAAACTTTCTTGAGAGAACTCCGCAATTGGGATTTGT
GTCAAACCAA
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