EY757014

Overview
NameEY757014
Unique NameEY757014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_VARPS (50S ribosomal protein L3 OS=Variovorax paradoxus (strain S110) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 72/175 (41.14%), Postives = 109/175 (62.29%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            TQ+K++ TDGY A+Q+ +   +  ++TKP+ GHL K+G+     ++EFR+   +    +AG  +A   +F+ G  VDV GT+IGKG+ G IKRHN      +HG S+SH   GSIG    PGRV+ GK+M G +G  T+    L++ +ID   ++++IKGA+PG  G  + V PA
Sbjct:   40 TQIKSQETDGYVALQVTFGSRKASRVTKPQAGHLAKAGVEAGEIIREFRVTADTAGQHKAGAVIAASSVFSVGQKVDVQGTSIGKGYAGTIKRHNMSSQRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTKTTQNLDVFRIDEARQLLLIKGAIPGSKGGFVTVRPA 214          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_THERP (50S ribosomal protein L3 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRV 590
            TQVKT   DGY AVQ+G+     K+  +P  GHL+ SG  P R+L+E R+     F+ GQ +    IF  G LVDV G   G+GFQGG+KRH F  G  THG S  HR  GSIG  T PGRV+KGK+M GRMG     +  L + ++D    +V+++GAVPG P  L+ V
Sbjct:   36 TQVKTSDRDGYQAVQLGFGH--RKRQNRPMQGHLRASGASP-RYLKEVRVDDATRFQVGQVIDCT-IFQPGQLVDVIGWRKGRGFQGGVKRHGFAGGPKTHGQSDRHRAPGSIGPTTDPGRVHKGKRMAGRMGPVRVTVQNLRVERVDPQRNLVLVRGAVPGHPNGLVIV 201          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_PSEMY (50S ribosomal protein L3 OS=Pseudomonas mendocina (strain ymp) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 82/173 (47.40%), Postives = 107/173 (61.85%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            TQ K E +DGY AVQ+     R  +++K + GH  K+ +   R + EFRL+  D ++AG  L   EIF  G LVDV+G + GKGF G IKR NFR    THG S SHR  GSIG   TPGRV+KGKKM G MG     +  LE+V++D +  ++++KGAVPG  G  + V PA
Sbjct:   36 TQFKNEESDGYRAVQVTVGERRASRVSKAQAGHFAKANVAAGRTVMEFRLEEGD-YQAGD-LINAEIFQAGQLVDVTGQSKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEVVRVDAERNLLLVKGAVPGATGGDVIVRPA 206          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_NEIMF (50S ribosomal protein L3 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQVK++ TDGY AVQ+ + + +  ++ K E GH  K+G+   R L EF L  + +   +AG ++    +F  G LVDV+GT+ GKGF G IKRHNF     +HG S+SHR  GSIG    PGRV+ GK+M G+ G T   + KLE+V++D + +++++KGAVPG   + + V P+  VG
Sbjct:   36 TQVKSKDTDGYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS-MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPGKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVG 213          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_NEIMB (50S ribosomal protein L3 OS=Neisseria meningitidis serogroup B GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQVK++ TDGY AVQ+ + + +  ++ K E GH  K+G+   R L EF L  + +   +AG ++    +F  G LVDV+GT+ GKGF G IKRHNF     +HG S+SHR  GSIG    PGRV+ GK+M G+ G T   + KLE+V++D + +++++KGAVPG   + + V P+  VG
Sbjct:   36 TQVKSKDTDGYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS-MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPGKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVG 213          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_NEIMA (50S ribosomal protein L3 OS=Neisseria meningitidis serogroup A GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQVK++ TDGY AVQ+ + + +  ++ K E GH  K+G+   R L EF L  + +   +AG ++    +F  G LVDV+GT+ GKGF G IKRHNF     +HG S+SHR  GSIG    PGRV+ GK+M G+ G T   + KLE+V++D + +++++KGAVPG   + + V P+  VG
Sbjct:   36 TQVKSKDTDGYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS-MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPGKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVG 213          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_NEIG1 (50S ribosomal protein L3 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 611
            TQVK++ TDGY AVQ+ + + +  ++ K E GH  K+G+   R L EF L  + +   +AG ++    +F  G LVDV+GT+ GKGF G IKRHNF     +HG S+SHR  GSIG    PGRV+ GK+M G+ G T   + KLE+V++D + +++++KGAVPG   + + V P+  VG
Sbjct:   36 TQVKSKDTDGYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS-MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPGKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVG 213          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CHLCV (50S ribosomal protein L3 OS=Chlamydophila caviae GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 75/175 (42.86%), Postives = 108/175 (61.71%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVR------DKKLTKPELGHLQKSGLIPMRHLQEFRLQ--SIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLL 584
            TQ+K ++TDGY+A+Q+G   +       +K++ KPELGHL+KSG      L+E RL   +I+    G +   E +  +   VD+SG + GKGFQG +KR  FR G  THGS  HR  GSIG  +TPGR + G K P  MG     +  LE+VKID + +V+++KGA+PG  G+++
Sbjct:   38 TQIKVDSTDGYNAIQMGANEINVPEKTLEKRMNKPELGHLKKSGSRVFGLLKEVRLSEDAINEVSLGNEFGLE-VLEDISSVDISGVSKGKGFQGVMKRFGFRGGPKTHGSGFHRHAGSIGMRSTPGRCFPGSKRPSHMGTVNVTVKNLEVVKIDLEKKVLLVKGAIPGPRGSVV 211          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_ACIAC (50S ribosomal protein L3 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 71/175 (40.57%), Postives = 108/175 (61.71%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            TQVKT+  DGY A+Q+ +   +  ++TKPE GHL K+G+     ++EFR+  ++   +  G  +   ++F+ G  VDV GT+IGKG+ G IKRHN      +HG S+SH   GSIG    PGRV+ GK+M G +G  T     L+++++D   ++++IKGA+PG  G  + V PA
Sbjct:   40 TQVKTQENDGYVALQVTFGSRKASRVTKPEAGHLAKAGVEAGEIIREFRVTAETAGKYATGAAVPVADVFSVGQKVDVQGTSIGKGYAGTIKRHNMASQRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDATTTTQNLDVIRVDEARQLLLIKGAIPGSKGGFVTVRPA 214          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_XYLFA (50S ribosomal protein L3 OS=Xylella fastidiosa GN=rplC PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.200e-33
Identity = 77/166 (46.39%), Postives = 100/166 (60.24%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQS--IDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPG 575
            Q+KT   DGYDAVQ+     R   + KPE GH  K+ +   R L EFR++   +  +  G ++    IF  G  VD+ G T GKGFQG IKRHNFR G  THG S SHR  GS+G   TPGRV+ GKKM G MG   + +  LE+VKID +  ++ ++GA+PG  G
Sbjct:   40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVRQSVQNLEVVKIDVERCLIAVRGAIPGASG 204          
The following BLAST results are available for this feature:
BLAST of EY757014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_VARPS7.044e-3341.1450S ribosomal protein L3 OS=Variovorax paradoxus (... [more]
RL3_THERP7.044e-3347.0650S ribosomal protein L3 OS=Thermomicrobium roseum... [more]
RL3_PSEMY7.044e-3347.4050S ribosomal protein L3 OS=Pseudomonas mendocina ... [more]
RL3_NEIMF7.044e-3343.5850S ribosomal protein L3 OS=Neisseria meningitidis... [more]
RL3_NEIMB7.044e-3343.5850S ribosomal protein L3 OS=Neisseria meningitidis... [more]
RL3_NEIMA7.044e-3343.5850S ribosomal protein L3 OS=Neisseria meningitidis... [more]
RL3_NEIG17.044e-3343.5850S ribosomal protein L3 OS=Neisseria gonorrhoeae ... [more]
RL3_CHLCV7.044e-3342.8650S ribosomal protein L3 OS=Chlamydophila caviae G... [more]
RL3_ACIAC7.044e-3340.5750S ribosomal protein L3 OS=Acidovorax avenae subs... [more]
RL3_XYLFA9.200e-3346.3950S ribosomal protein L3 OS=Xylella fastidiosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757014 ID=EY757014; Name=EY757014; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGTGTCGTACTTCGCGCCCGACGGAACTGTTGTTCCGGTGA
CTGTAGTTGGGTTCAGAGAAGGGAATATTGTGCACCCAAGTTAAGACTGA
AGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGGG
ACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTTA
ATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGTT
TGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGATC
TTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCATT
AAGCGGCACAATTTCAGAAGGGGTGCGATGACCCATGGTTCTAAGAGTCA
TAGACAATTGGGTTCCATTGGTGCTGGAACAACTCCGGGCCGTGTATACA
AGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACAACAAGGAAGATCTGA
AAGCTCGAGATTGTAAAAATTGATAATGACCTTCGTGTTGTAATGATAAA
AGGGGCTGTCCCTGGTAAGCCCGGAAATCTTCTGCGTGTAGCACCAGCTA
AGATTGTTGGGAAGAACATACCAAATAACTAGGTTGGTGCATTATTCTGA
TTGCTTCGCTTTGTGCAGTTCTACATTGGCAAAGAGATTAGTCTTTGTAA
ACCCTTCGTTTTGTGAGTGGAATTTAGACTTTCAGTTAACATCTTGTGAT
GTATCATTGGCTCCTTTGCCAGATACATTTCTATCTCTCTTAGGATTTTG
AATTAAGATTGCCTTCAGCGGAGAAAACCCATATTAATCTTACAAGGGCA
TACACTTTGCCAAAAAACTTTCTTGAGAGAACTCCGCAATTGGGATTTGT
GTCAAACCAA
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