EY757014

Overview
NameEY757014
Unique NameEY757014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_ALKOO (50S ribosomal protein L3 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.982e-44
Identity = 89/177 (50.28%), Postives = 120/177 (67.80%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 614
            TQVKT   DGY+A+Q+GY ++ ++ + KP  GH  K+G+ P R LQEFRL+S +GF AGQ+L   ++F  GD VD+SG + GKGFQG IKRHN  RG M HGS+ HR  GS+GA + P RV+KGKK+ G MG     I  LE+VK+D +  ++++KGAVPG    LL +  +   GK
Sbjct:   35 TQVKTIEKDGYNAIQVGYGQINERNVNKPSKGHFDKAGVTPKRSLQEFRLESTEGFTAGQELK-ADLFKAGDKVDISGVSKGKGFQGVIKRHNQSRGPMAHGSRYHRGPGSMGAASYPSRVFKGKKLAGHMGHENVTIQNLEVVKVDVERNLLIVKGAVPGPKKGLLTINTSIKQGK 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.581e-43
Identity = 85/166 (51.20%), Postives = 120/166 (72.29%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLL 584
            Q KT  TDGY+A+Q+G+  V++K+LTKP +GH +K+G+   R+L+EFRL  I G+E G ++  + IF  GD VDV+G + GKGF G +KR+   RG M+HGSK HR++GS+GA T PGR +KGK MPG MG     I  LE+VK+D +L ++++KG+VPG  G+LL
Sbjct:   37 QKKTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMGATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_THEPX (50S ribosomal protein L3 OS=Thermoanaerobacter sp. (strain X514) GN=rplC PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.867e-42
Identity = 83/166 (50.00%), Postives = 119/166 (71.69%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLL 584
            Q KT  TDGY+A+Q+G+  V++K+LTKP +GH +K+G+   R+L+EFRL  I G+E G ++  + IF  GD V+V+G + GKGF G +KR+   RG M+HGSK HR++GS+ A T PGR +KGK MPG MG     I  LE+VK+D +L ++++KG+VPG  G+LL
Sbjct:   37 QKKTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVNVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMSATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.416e-41
Identity = 83/161 (51.55%), Postives = 109/161 (67.70%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPG 566
            TQVKT   DGY AVQ+G+  +R+  + KP+ GH  K+G+   R L+EFR ++   +  GQ++  + IF  GD +D +GT+ GKGFQG IKRH   RG M HGSK HR  GS GA TTPGRV+KGK MPG+MG     +  LE+VKID D  ++++KGAVPG
Sbjct:   36 TQVKTVDNDGYAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVD-IFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKFHRHAGSNGAATTPGRVFKGKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPG 195          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_GRATL (50S ribosomal protein L3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl3 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.849e-41
Identity = 82/171 (47.95%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   78 LCTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRV 590
            L T +K   + GY A+QIGY +V   KL K ++GHL K  +  ++ L+E+++ S + ++ G+ +  E++ +    + VSGT+IGKGF G IKRHNF RG M+HGSK+HRQ GSIGAGTTPG+V+ GKKM GRMGG    I  L+I+ I  +  ++++KG+VPGKPGN++ +
Sbjct:   34 LITDIKKMESHGYAAIQIGYVKVNGNKLNKAQIGHLNKYNMPLVKFLKEYKVASTENYQIGKWITVEDL-SINQNISVSGTSIGKGFTGCIKRHNFSRGPMSHGSKNHRQPGSIGAGTTPGKVFAGKKMAGRMGGKKVTIQNLKIIDIKINNNLIIVKGSVPGKPGNIVSI 203          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_HELMI (50S ribosomal protein L3 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.155e-41
Identity = 85/168 (50.60%), Postives = 120/168 (71.43%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRV 590
            Q KT   DGY+AVQIG+  VR+K L KP+ GHL+ +G+  +R L+E ++ S+D ++ GQ+L   ++F+ G+ VDV GT+ GKGF GGIKRHNF+RG M HGSK HR+ GS GA   P R++KG+KMPGRMG     + KL++V++D +  +++IKGAVPG    LL +
Sbjct:   38 QKKTVEKDGYEAVQIGFGDVREKLLNKPKRGHLKNAGVRLVRVLREIKVDSMDEYKVGQELK-ADVFSAGEYVDVVGTSKGKGFAGGIKRHNFKRGPMKHGSKYHRRPGSAGA-KGPARIFKGRKMPGRMGNERVTVQKLQVVRVDAERNLLLIKGAVPGPKRGLLLI 203          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_ALKMQ (50S ribosomal protein L3 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.155e-41
Identity = 85/177 (48.02%), Postives = 116/177 (65.54%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 614
            TQ+K++ TDGY++VQ+GY   + K   KP  GH +K+G  P R ++EFR+ S +GF AGQ+L   ++F  GD VDV+G + GKGFQG IKRH   RG M HGS+ HR+ GS+GA   PGRV+KGK +PG MG        LEIV++D +  +++IKGAVPG    +L +      GK
Sbjct:   35 TQIKSDETDGYNSVQVGYGEKKIKNTIKPLQGHFEKAGTTPKRTMKEFRVDSTEGFTAGQELK-ADLFQAGDKVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGASAYPGRVFKGKNLPGHMGNVQVTAQNLEIVRVDLEKNLLLIKGAVPGPKKGVLVIQTTVKQGK 210          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RK3_EMIHU (50S ribosomal protein L3, chloroplastic OS=Emiliania huxleyi GN=rpl3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.120e-41
Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVA 593
            Q+KT  TDGYDA+Q+GY   +  K++KP  GHLQK G    R   EFR++  + +  G ++     F+ G  V V+GT+IGKGF G  KRHNF RG MTHGSK+HR  GSIGAG+TPGRVY GKKM G +G T   I   EI+ +     ++++KG++PGK  N+LR+A
Sbjct:   37 QIKTTKTDGYDAIQVGYLEEKLSKISKPIQGHLQKCGSTGYRKFGEFRVEDPETYNLGDQIT-TSAFSVGQKVRVTGTSIGKGFAGNQKRHNFSRGPMTHGSKNHRLPGSIGAGSTPGRVYPGKKMAGHLGNTKTTIKNSEILFVSEKENILILKGSLPGKAKNILRIA 204          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_DESHY (50S ribosomal protein L3 OS=Desulfitobacterium hafniense (strain Y51) GN=rplC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.179e-41
Identity = 80/171 (46.78%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            Q KT+ATDGY+A+Q+G+  +R++   KP+ GH+ K+ + PMR+++EFR+  ++ +E GQ +   E+F  GD VDV G + GKGF G IKRH   RG M HGSK HR+ GS+GA   P RV+KG+ +PGRMGG    +  L++V++D D  ++++KGAVPG   +LL + P+
Sbjct:   40 QKKTKATDGYNAIQVGFGALRERLANKPQKGHVAKASVKPMRYIREFRVDDVEAYEIGQVIT-AELFAAGDAVDVVGISKGKGFAGMIKRHGASRGPMKHGSKYHRRTGSLGA-KGPARVFKGRNLPGRMGGERVTVQNLKVVRVDADKNMILVKGAVPGAKKSLLILKPS 208          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CORU7 (50S ribosomal protein L3 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.179e-41
Identity = 82/173 (47.40%), Postives = 115/173 (66.47%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            TQV+T+  DGY+AVQI +  +  +K+ KPE GH +K+G+ P RH+ E R+    G+E GQ +  E IFNE D VDV+GT+ G GF GG+KRH F      HG+++ HR++G IG   TPGRV+KGK+M GRMG     +  L++ K+D D  +++IKGAVPG  G ++ V  A
Sbjct:   40 TQVRTKDIDGYEAVQIAFGEIDPRKVNKPESGHFKKAGVTPRRHVAEIRVADASGYEVGQDVTVE-IFNEVDFVDVTGTSKGHGFAGGMKRHGFAGQGAAHGNQAAHRRVGGIGGAATPGRVFKGKRMAGRMGNNRVTMQNLKVAKVDTDSNLLLIKGAVPGINGGIVVVKTA 211          
The following BLAST results are available for this feature:
BLAST of EY757014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_ALKOO3.982e-4450.2850S ribosomal protein L3 OS=Alkaliphilus oremlandi... [more]
RL3_THEP32.581e-4351.2050S ribosomal protein L3 OS=Thermoanaerobacter pse... [more]
RL3_THEPX4.867e-4250.0050S ribosomal protein L3 OS=Thermoanaerobacter sp.... [more]
RL3_CLOPH1.416e-4151.5550S ribosomal protein L3 OS=Clostridium phytoferme... [more]
RK3_GRATL1.849e-4147.9550S ribosomal protein L3, chloroplastic OS=Gracila... [more]
RL3_HELMI3.155e-4150.6050S ribosomal protein L3 OS=Heliobacterium modesti... [more]
RL3_ALKMQ3.155e-4148.0250S ribosomal protein L3 OS=Alkaliphilus metallire... [more]
RK3_EMIHU4.120e-4149.7050S ribosomal protein L3, chloroplastic OS=Emilian... [more]
RL3_DESHY9.179e-4146.7850S ribosomal protein L3 OS=Desulfitobacterium haf... [more]
RL3_CORU79.179e-4147.4050S ribosomal protein L3 OS=Corynebacterium urealy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757014 ID=EY757014; Name=EY757014; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGTGTCGTACTTCGCGCCCGACGGAACTGTTGTTCCGGTGA
CTGTAGTTGGGTTCAGAGAAGGGAATATTGTGCACCCAAGTTAAGACTGA
AGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGGG
ACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTTA
ATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGTT
TGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGATC
TTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCATT
AAGCGGCACAATTTCAGAAGGGGTGCGATGACCCATGGTTCTAAGAGTCA
TAGACAATTGGGTTCCATTGGTGCTGGAACAACTCCGGGCCGTGTATACA
AGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACAACAAGGAAGATCTGA
AAGCTCGAGATTGTAAAAATTGATAATGACCTTCGTGTTGTAATGATAAA
AGGGGCTGTCCCTGGTAAGCCCGGAAATCTTCTGCGTGTAGCACCAGCTA
AGATTGTTGGGAAGAACATACCAAATAACTAGGTTGGTGCATTATTCTGA
TTGCTTCGCTTTGTGCAGTTCTACATTGGCAAAGAGATTAGTCTTTGTAA
ACCCTTCGTTTTGTGAGTGGAATTTAGACTTTCAGTTAACATCTTGTGAT
GTATCATTGGCTCCTTTGCCAGATACATTTCTATCTCTCTTAGGATTTTG
AATTAAGATTGCCTTCAGCGGAGAAAACCCATATTAATCTTACAAGGGCA
TACACTTTGCCAAAAAACTTTCTTGAGAGAACTCCGCAATTGGGATTTGT
GTCAAACCAA
back to top