EY757014

Overview
NameEY757014
Unique NameEY757014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CARHZ (50S ribosomal protein L3 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.566e-40
Identity = 82/171 (47.95%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            Q KT A DGY+A+Q+G+  +++ K+ KP  GH  ++ + PMR+L+E R+++ID +E GQ++  + IF  G+ VDV+G + GKGF GGIKRH F RG M HGSK HR+ GS+GA   P RV+ G+K+PGR+G     I  LE+VK+D +  +++IKG+VPG  G+LL +  A
Sbjct:   37 QKKTIANDGYNAIQLGFGEIKESKVNKPLKGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVD-IFTVGEKVDVTGISKGKGFAGGIKRHGFHRGPMAHGSKYHRRPGSLGA-KGPARVFLGRKLPGRLGMERVTIQNLEVVKVDPERNLLVIKGSVPGIRGSLLIIKEA 205          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_SYNWW (50S ribosomal protein L3 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.045e-40
Identity = 77/164 (46.95%), Postives = 119/164 (72.56%), Query Frame = 3
Query:   81 CT--QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPG 566
            CT  Q K   +DGY+++Q+G+  +++K   KP  GH +K+ + P+R+++EFR+ ++D ++ GQ++   +IF  GDLVDV GT+ GKGF GG+KRHNF RG+M HGSK HR+ GS+GA   P RV+KG+K+PGR+GG    +  L++VK+  D  +++IKG++PG
Sbjct:   36 CTVLQKKKVESDGYESIQVGFYNLKEKLANKPARGHFKKANVKPLRYIKEFRIDNVDDYDVGQEIT-ADIFTTGDLVDVIGTSKGKGFAGGVKRHNFARGSMGHGSKYHRRPGSLGA-KGPARVFKGRKLPGRLGGERVTVQGLKVVKVYPDRNLILIKGSIPG 197          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_ANATD (50S ribosomal protein L3 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplC PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.488e-40
Identity = 79/166 (47.59%), Postives = 112/166 (67.47%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLL 584
            Q KT   DGY A+Q+G+  +++ KL KP  GH  K G+ P R L+E RL+  D +E GQ++  + IF  G+ VDV+G +  KGFQG IKRH  +RG M+HGS  HR++GS+G+ T P R + GKKMPGRMGG    +  L++VK+D D  ++++KG+VPG   +LL
Sbjct:   37 QKKTVEKDGYSAIQVGFEDIKESKLNKPLRGHFAKHGVKPKRFLRELRLKDADKYEVGQEIRVD-IFQPGEKVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGERVTVLNLQVVKVDPDRNLLLVKGSVPGNKNSLL 201          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CLOD6 (50S ribosomal protein L3 OS=Clostridium difficile (strain 630) GN=rplC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.555e-40
Identity = 79/180 (43.89%), Postives = 122/180 (67.78%), Query Frame = 3
Query:   75 ILCTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 614
            ++ TQ+KT   DGY+A+QIG+   ++K L KP+ GHL  + ++  +HL+EFR+ S++G+  GQ++   ++F  G  +DV+G + GKGFQG IKRH   RG  THGS+ HR+ GS+GA + PGRV+K KK+ G MG     +  LE+VK+D D  ++++KGA+PG  G+++ +  A  V K
Sbjct:   32 MVVTQIKTVDKDGYNAIQIGFEDAKEKALNKPKKGHLAAANVLK-KHLKEFRVDSVEGYTVGQEIK-ADVFEAGAKIDVTGISKGKGFQGPIKRHGQSRGPETHGSRYHRRPGSMGACSYPGRVFKNKKLAGHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAIKVSK 209          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CLONN (50S ribosomal protein L3 OS=Clostridium novyi (strain NT) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.770e-40
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPG 566
            Q KTE  DGY+A+Q+G+  +R+K   KP+ GH  K+G+   R ++EFRL++ID +E G ++   ++F  GD VDV+G + GKGFQG IKR NF RG M HGSK HR +GS+GA + P R +K KKMPG MG     I  +E+VK+  D  V++IKG +PG
Sbjct:   37 QKKTEEKDGYNAIQVGFEDIREKLANKPKKGHFAKAGVSLKRIVREFRLENIDEYEVGTEIK-ADVFAAGDKVDVTGVSKGKGFQGTIKRWNFHRGPMAHGSKYHRAVGSMGAASDPSRTFKNKKMPGHMGNKKSTILNIEVVKVMADKNVLLIKGGIPG 195          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CALS8 (50S ribosomal protein L3 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.770e-40
Identity = 78/166 (46.99%), Postives = 114/166 (68.67%), Query Frame = 3
Query:   87 QVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLL 584
            Q KT   DGY A+Q+G+  +++ KL KP  GH  K G+ P R+L+E RL+  D +E GQ++  + IF+ G+ VDV+G +  KGFQG IKRH  +RG M+HGS  HR++GS+G+ T P R + GKKMPGRMGG    +  L++VK+D +  ++++KG+VPG   +LL
Sbjct:   37 QKKTVEKDGYAAIQVGFEDIKETKLNKPLRGHFAKHGVKPKRYLRELRLKDADKYEVGQEIRVD-IFSPGERVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGQRVTVLNLQVVKVDPERNLLLVKGSVPGNKNSLL 201          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CLOTH (50S ribosomal protein L3 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.015e-39
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = 3
Query:   75 ILCTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRV 590
            I   Q K   TDGY++V++ +  V++K+L KPE G   K G+ P ++++EFR+   D +E  Q++  EE+F  GD VDV+G + GKGF G IKR   RRG  THGS  HR++GS+GA T P RV+KGKK+PG MG     +  L++VK+D +  ++++KGAVPG  G LL +
Sbjct:   33 ITVVQKKKPETDGYNSVRVAFGDVQEKRLNKPEKGLFAKLGIAPKKYIREFRVDDPDKYELKQEIKVEEMFQPGDRVDVTGISKGKGFAGVIKRFGNRRGKETHGSMYHRRVGSMGANTNPARVFKGKKLPGHMGVERVTVQNLDVVKVDAERNLMLVKGAVPGAKGGLLMI 204          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CORGL (50S ribosomal protein L3 OS=Corynebacterium glutamicum GN=rplC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39
Identity = 77/173 (44.51%), Postives = 114/173 (65.90%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            +Q++T  TDGY+A+QI Y  +  +K+ +P  GH +K+G+ P RH+ E R+  + G+E GQ +  E IFN+   VDV+GTT GKG+ G +KRH F      HG+++ HR++G IGA  TPGR++KGK+M GRMG        L++ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   40 SQIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CORGB (50S ribosomal protein L3 OS=Corynebacterium glutamicum (strain R) GN=rplC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39
Identity = 77/173 (44.51%), Postives = 114/173 (65.90%), Query Frame = 3
Query:   84 TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            +Q++T  TDGY+A+QI Y  +  +K+ +P  GH +K+G+ P RH+ E R+  + G+E GQ +  E IFN+   VDV+GTT GKG+ G +KRH F      HG+++ HR++G IGA  TPGR++KGK+M GRMG        L++ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   40 SQIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211          
BLAST of EY757014 vs. ExPASy Swiss-Prot
Match: RL3_CHLSY (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.325e-39
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   78 LCTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKI*KLEIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 599
            + TQ++T   DGY AVQ+GY  V  +KLTKP+ GHL+ SG   +R+L+EF          G+ +  E +F  G  VD+SGT+ G+GF G +KRH FR G  THG S  HR  GSIGAGTTPGRV+KG++M GRMGGT   I  LE+V++  +  ++++KG+VPG    LL++  A
Sbjct:   34 IVTQIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVE-LFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKGQRMAGRMGGTRVTIQNLEVVEVLPEQNLLLVKGSVPGARNGLLQIRKA 207          
The following BLAST results are available for this feature:
BLAST of EY757014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_CARHZ1.566e-4047.9550S ribosomal protein L3 OS=Carboxydothermus hydro... [more]
RL3_SYNWW2.045e-4046.9550S ribosomal protein L3 OS=Syntrophomonas wolfei ... [more]
RL3_ANATD3.488e-4047.5950S ribosomal protein L3 OS=Anaerocellum thermophi... [more]
RL3_CLOD64.555e-4043.8950S ribosomal protein L3 OS=Clostridium difficile ... [more]
RL3_CLONN7.770e-4049.3850S ribosomal protein L3 OS=Clostridium novyi (str... [more]
RL3_CALS87.770e-4046.9950S ribosomal protein L3 OS=Caldicellulosiruptor s... [more]
RL3_CLOTH1.015e-3945.9350S ribosomal protein L3 OS=Clostridium thermocell... [more]
RL3_CORGL1.325e-3944.5150S ribosomal protein L3 OS=Corynebacterium glutam... [more]
RL3_CORGB1.325e-3944.5150S ribosomal protein L3 OS=Corynebacterium glutam... [more]
RL3_CHLSY1.325e-3948.0050S ribosomal protein L3 OS=Chloroflexus aurantiac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757014 ID=EY757014; Name=EY757014; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGTGTCGTACTTCGCGCCCGACGGAACTGTTGTTCCGGTGA
CTGTAGTTGGGTTCAGAGAAGGGAATATTGTGCACCCAAGTTAAGACTGA
AGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGGG
ACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTTA
ATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGTT
TGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGATC
TTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCATT
AAGCGGCACAATTTCAGAAGGGGTGCGATGACCCATGGTTCTAAGAGTCA
TAGACAATTGGGTTCCATTGGTGCTGGAACAACTCCGGGCCGTGTATACA
AGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACAACAAGGAAGATCTGA
AAGCTCGAGATTGTAAAAATTGATAATGACCTTCGTGTTGTAATGATAAA
AGGGGCTGTCCCTGGTAAGCCCGGAAATCTTCTGCGTGTAGCACCAGCTA
AGATTGTTGGGAAGAACATACCAAATAACTAGGTTGGTGCATTATTCTGA
TTGCTTCGCTTTGTGCAGTTCTACATTGGCAAAGAGATTAGTCTTTGTAA
ACCCTTCGTTTTGTGAGTGGAATTTAGACTTTCAGTTAACATCTTGTGAT
GTATCATTGGCTCCTTTGCCAGATACATTTCTATCTCTCTTAGGATTTTG
AATTAAGATTGCCTTCAGCGGAGAAAACCCATATTAATCTTACAAGGGCA
TACACTTTGCCAAAAAACTTTCTTGAGAGAACTCCGCAATTGGGATTTGT
GTCAAACCAA
back to top