CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SALTO (60 kDa chaperonin 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKMIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SALAI (60 kDa chaperonin 1 OS=Salinispora arenicola (strain CNS-205) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKMIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SACEN (60 kDa chaperonin 1 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F++D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKMIAFDED--ARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPWEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  355 LQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            L+ GVN LA+ + VT+GPKGRNVV+E K+GAP IVNDGVT+AKE++LEDP ENIGAKL+ Q
Sbjct:   15 LEKGVNNLANALKVTIGPKGRNVVIEKKFGAPDIVNDGVTIAKEIDLEDPFENIGAKLIEQ 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ACIC1 (60 kDa chaperonin 1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEAARRALERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+EL+D  ENIGA+LVR+
Sbjct:    2 AAKDVKFSRD--ARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELKDKFENIGAQLVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GVN LAD V VTLGPKGRNVVLE  +GAP+I  DGV+VAKE+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFDTD--ARNRMLKGVNTLADAVKVTLGPKGRNVVLEKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_THEVL2.918e-1961.0460 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH601_SALTO2.918e-1961.8460 kDa chaperonin 1 OS=Salinispora tropica (strain... [more]
CH601_SALAI2.918e-1961.8460 kDa chaperonin 1 OS=Salinispora arenicola (stra... [more]
CH601_SACEN2.918e-1963.1660 kDa chaperonin 1 OS=Saccharopolyspora erythraea... [more]
CH601_PROMT2.918e-1959.7460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_PROM32.918e-1959.7460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_PROM12.918e-1970.4960 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_ACIC12.918e-1966.1860 kDa chaperonin 1 OS=Acidothermus cellulolyticus... [more]
CH60_SPHWW3.811e-1961.0460 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_SILST3.811e-1961.0460 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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