CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOB1 (60 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F +   A + ++ GV+KLAD V VTLGPKGRNVVL+ K+G+P I NDGVT+A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKSLLFGEQ--ARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+++  A + +  GV+ LAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_STRLI (60 kDa chaperonin 2 OS=Streptomyces lividans GN=groL2 PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEKARRGLEGGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SALAI (60 kDa chaperonin 2 OS=Salinispora arenicola (strain CNS-205) GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F+ D  A  +L++GVN LAD V VTLGP+GRNVVL+ K+GAP I NDGVT+AKE+EL +P EN+GA+LV++
Sbjct:    2 AKILSFSDD--ARHQLEHGVNALADAVKVTLGPRGRNVVLDKKFGAPTITNDGVTIAKEIELTNPYENLGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_KINRD (60 kDa chaperonin 2 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N +  A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDG+T+AKE+ELED VEN G  L+RQA
Sbjct:    2 AKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+KLA+ V VT+GPKGRNVVL+  Y  P I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKDLKFSED--ARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+KLA+ V VT+GPKGRNVVL+  Y  P I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKDLKFSED--ARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAEP (60 kDa chaperonin OS=Staphylococcus epidermidis GN=groL PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+KLA+ V VT+GPKGRNVVL+  Y  P I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKDLKFSED--ARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ FN +  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP+I  DGV+VAKE+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFNTE--ARNKMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOB13.811e-1960.5360 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_BACLD3.811e-1961.8460 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH602_STRLI3.811e-1966.1860 kDa chaperonin 2 OS=Streptomyces lividans GN=gr... [more]
CH602_SALAI3.811e-1961.8460 kDa chaperonin 2 OS=Salinispora arenicola (stra... [more]
CH602_KINRD3.811e-1966.1860 kDa chaperonin 2 OS=Kineococcus radiotolerans (... [more]
CH601_SYNY33.811e-1958.4460 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_STAES4.977e-1961.8460 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ4.977e-1961.8460 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEP4.977e-1961.8460 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH60_SILPO4.977e-1961.0460 kDa chaperonin OS=Silicibacter pomeroyi GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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