CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_NOCAS (60 kDa chaperonin OS=Nocardia asteroides GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  343 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            A K L+ G++ LA+ V VTLGPKGRNVV+E KYG P+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:   11 ARKALEKGIDILAEAVSVTLGPKGRNVVIEKKYGPPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACP2 (60 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+++  A + +  GV+ LAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSEE--ARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACA2 (60 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+++  A + +  GV+ LAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSEE--ARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/76 (59.21%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F +   A + L+ GVNKLAD V VTLGPKGRNVV++ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++
Sbjct:    2 AKEIRFGEK--ARRSLEAGVNKLADTVKVTLGPKGRNVVIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILCEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_NOCSJ (60 kDa chaperonin 2 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K + FN++  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    3 KLIAFNEE--ARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_NOCFA (60 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_MYCLE (60 kDa chaperonin 2 OS=Mycobacterium leprae GN=groL2 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGSPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NOCAS4.977e-1966.1860 kDa chaperonin OS=Nocardia asteroides GN=groL P... [more]
CH60_GALSU4.977e-1965.1560 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_BACP24.977e-1961.8460 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH60_BACA24.977e-1961.8460 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH60_ALKMQ4.977e-1959.2160 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH602_SYNSC4.977e-1958.4460 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_NOCSJ4.977e-1962.6760 kDa chaperonin 2 OS=Nocardioides sp. (strain BA... [more]
CH602_NOCFA4.977e-1966.1860 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2... [more]
CH602_MYCLE4.977e-1966.1860 kDa chaperonin 2 OS=Mycobacterium leprae GN=gro... [more]
CH601_SYNS94.977e-1958.4460 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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