CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_RHOSR (60 kDa chaperonin 1 OS=Rhodococcus sp. (strain RHA1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCS2 (60 kDa chaperonin 1 OS=Mycobacterium smegmatis GN=groL1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCGI (60 kDa chaperonin 1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_CORJK (60 kDa chaperonin 1 OS=Corynebacterium jeikeium (strain K411) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGVT+A+E+ELEDP E IGA+LV++
Sbjct:    2 AKMIAFDEE--ARRGLEKGLNTLADAVKVTLGPKGRNVVLERKWGAPTITNDGVTIAREIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N+   A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEQ--ARRALEKGIDILTESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F  D  A +KLQ GV+ LA+ V VTLGP+GRNVVL+ K+GAP + NDGVT+A+E+ELEDP EN+GA+LV++
Sbjct:    3 AKQIIF--DEAARRKLQAGVDALANTVKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+ LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV +
Sbjct:    2 AKDLKFSED--ARRAMLRGVDTLADAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDAFENMGAQLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K++ F++D  A + +  GV+KLAD V VTLGPKGRNVVL+ K+ AP I NDGVT+AKE+ELEDP EN+GAKLV +
Sbjct:    3 KEIKFSED--ARRAMLAGVDKLADAVKVTLGPKGRNVVLDKKFVAPLITNDGVTIAKEIELEDPYENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LEPBP (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F  D  A +KL +GVNKLA+ V VTLGPKGRNVV++ K+G+P I  DGVTVAKE+ELED +EN+GA++V++
Sbjct:    2 AKTIEF--DETARRKLLSGVNKLANAVKVTLGPKGRNVVIDKKFGSPTITKDGVTVAKEIELEDAIENMGAQMVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LEPBA (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F  D  A +KL +GVNKLA+ V VTLGPKGRNVV++ K+G+P I  DGVTVAKE+ELED +EN+GA++V++
Sbjct:    2 AKTIEF--DETARRKLLSGVNKLANAVKVTLGPKGRNVVIDKKFGSPTITKDGVTVAKEIELEDAIENMGAQMVKE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOSR4.977e-1961.8460 kDa chaperonin 1 OS=Rhodococcus sp. (strain RHA... [more]
CH601_MYCS24.977e-1966.1860 kDa chaperonin 1 OS=Mycobacterium smegmatis GN=... [more]
CH601_MYCGI4.977e-1966.1860 kDa chaperonin 1 OS=Mycobacterium gilvum (strai... [more]
CH601_CORJK4.977e-1961.8460 kDa chaperonin 1 OS=Corynebacterium jeikeium (s... [more]
CH60_SYNR36.501e-1958.4460 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_SYMTH6.501e-1960.5360 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_OCEIH6.501e-1961.8460 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_MACCJ6.501e-1962.6760 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_LEPBP6.501e-1960.5360 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]
CH60_LEPBA6.501e-1960.5360 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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