CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCSS (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain MCS) GN=groL1 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCSK (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain KMS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCSJ (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain JLS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MYCBP (60 kDa chaperonin 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_OENOB (60 kDa chaperonin OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK++ F++D  A  ++Q G++KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK VEL+D  EN+GAKLV +A
Sbjct:    2 AKEVRFSED--ARTRMQAGIDKLADAVKTTIGPKGRNVVLEQSYGTPTITNDGVTIAKAVELDDHYENMGAKLVTEA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AKD+ F+++  A + L  GV+KLAD V  TLGPKGRNVVLE  YGAP I NDGVT+AK ++L+D  EN+GAKLV +A
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKSIDLKDHFENMGAKLVSEA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F++D  A   +  GV+ LAD V VT+GPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSED--ARHAMLRGVDALADAVKVTIGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDRFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F ++  + + +Q GV+KLA+ V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELEDP EN+GA+LV++
Sbjct:    2 AKSILFGEE--SRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNS9 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F+ +  +   L+ GVN LA+ V VT+GPKGRNVVLE K+GAP IVNDG T+A+++ELEDP EN+GAKL++Q
Sbjct:    2 AKLLSFSDE--SRSSLERGVNALANAVRVTIGPKGRNVVLEKKFGAPDIVNDGDTIARDIELEDPFENLGAKLIQQ 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_FRAAA (60 kDa chaperonin 2 OS=Frankia alni (strain ACN14a) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+G P I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKMIAFDEE--ARRGLERGMNQLADAVRVTLGPKGRNVVLEKKWGVPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_MYCSS6.501e-1966.1860 kDa chaperonin 1 OS=Mycobacterium sp. (strain M... [more]
CH601_MYCSK6.501e-1966.1860 kDa chaperonin 1 OS=Mycobacterium sp. (strain K... [more]
CH601_MYCSJ6.501e-1966.1860 kDa chaperonin 1 OS=Mycobacterium sp. (strain J... [more]
CH601_MYCBP6.501e-1966.1860 kDa chaperonin 1 OS=Mycobacterium bovis (strain... [more]
CH60_OENOB8.490e-1959.7460 kDa chaperonin OS=Oenococcus oeni (strain BAA-3... [more]
CH60_LACGA8.490e-1961.0460 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_EXISA8.490e-1961.8460 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_CLOBO8.490e-1959.2160 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH602_SYNS98.490e-1960.5360 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_FRAAA8.490e-1960.5360 kDa chaperonin 2 OS=Frankia alni (strain ACN14a... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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