CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILCESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDNIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F+ +  A   L+ G+N LAD V VT+GP+GRNVVLE  +GAP IVNDG T+AKE++LEDP ENIGAKL++Q
Sbjct:    2 AKLLKFSDESRAA--LERGMNALADAVRVTIGPRGRNVVLEKSFGAPDIVNDGDTIAKEIDLEDPFENIGAKLIQQ 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++A
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SERRU (60 kDa chaperonin (Fragment) OS=Serratia rubidaea GN=groL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+ NGVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLNGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MYCGE (60 kDa chaperonin OS=Mycoplasma genitalium GN=groL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK+L F KD  A  +L  G+NK+A+ V VT+GPKG+NV+LE K+  P I NDGVT+AKE+EL DPVENIGAK++  A
Sbjct:    2 AKELIFGKD--ARTRLLQGINKIANAVKVTVGPKGQNVILERKFANPLITNDGVTIAKEIELSDPVENIGAKVISVA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ ++ D  A   ++ GVNKLA+ V VTLGPKGRNVVL+  +GAP I NDGVT+AKE+ELED  EN+GA+LV++
Sbjct:    2 AKDIKYSAD--ARVAMEAGVNKLANTVRVTLGPKGRNVVLDKSFGAPLITNDGVTIAKEIELEDSFENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIQFSEE--ARRSMLKGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  322 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            H   D  A  KL++GV+ +A+ V VTLGPKGRNVV++ KYGAP I  DG++VAKE+EL+DPVEN+GA+L+++
Sbjct:    4 HIIFDSEARAKLKSGVDTMANAVKVTLGPKGRNVVIDKKYGAPSITKDGISVAKEIELKDPVENLGAQLIKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_AGGAC (60 kDa chaperonin OS=Aggregatibacter actinomycetemcomitans GN=groL PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+ NGVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLNGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH604_FRASC (60 kDa chaperonin 4 OS=Frankia sp. (strain CcI3) GN=groL4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G+N+LAD V VTLGPKGRNVVLE K+G P I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    8 DEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGVPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ACAM18.490e-1959.7460 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH601_SYNPW8.490e-1961.8460 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_THEBR1.109e-1855.8460 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_SERRU1.109e-1861.0460 kDa chaperonin (Fragment) OS=Serratia rubidaea ... [more]
CH60_MYCGE1.109e-1859.7460 kDa chaperonin OS=Mycoplasma genitalium GN=groL... [more]
CH60_CLOPH1.109e-1860.5360 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH60_BACSK1.109e-1860.5360 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH60_AMOA51.109e-1858.3360 kDa chaperonin OS=Amoebophilus asiaticus (strai... [more]
CH60_AGGAC1.109e-1861.0460 kDa chaperonin OS=Aggregatibacter actinomycetem... [more]
CH604_FRASC1.109e-1864.7160 kDa chaperonin 4 OS=Frankia sp. (strain CcI3) G... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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